Index

Symbols

{{ obj.name }}{% if obj.args %}({{ obj.args|join(',') }}){% endif %}() (class)

_

__docformat__ (in module antibunching) (in module change_point) (in module controllers) (in module generate_sums) (in module main) (in module save_and_load) (in module settings_dialog) (in module smsh5) (in module tcspcfit) __eq__() (change_point.ParticleMicrotimesSubset method) __get_rs_dataset() (in module smsh5_file_reader) __getitem__() (change_point.ParticleMicrotimesSubset method) __iter__() (change_point.ParticleMicrotimesSubset method) __len__() (change_point.ParticleMicrotimesSubset method) __repr__() (change_point.ParticleMicrotimesSubset method) __str__() (dbg.MemSize method) __weighted_likelihood_ratio() (change_point.ChangePointAnalysis method) _abstimes (change_point.ChangePointAnalysis property) _accum_step (processes.ProcessProgress attribute) _ahc_groups (grouping.ClusteringStep attribute) _ahc_p_mj (grouping.ClusteringStep attribute) _block_change() (controllers.FilteringController static method) _calc_and_store() (generate_sums.CPSums method) _calc_sums() (generate_sums.CPSums method) _children (tree_model.DatasetTreeNode attribute) _columncount (tree_model.DatasetTreeNode attribute) _cpa (change_point.ChangePoints attribute) _crosshair_item (controllers.RasterScanController attribute) _current_value (processes.ProgressTracker attribute) _data (tree_model.DatasetTreeNode attribute) _em_log_l (grouping.ClusteringStep attribute) _em_p_mj (grouping.ClusteringStep attribute) _end_ind (change_point.ParticleMicrotimesSubset attribute) _export_level_plot() (exporting.Exporter method) _export_levels() (exporting.Exporter method) _export_path (file_conversion.ConvertFileDialog attribute) _export_trace() (exporting.Exporter method) _file (smsh5.H5dataset attribute) _file_path (file_conversion.CSVReader attribute) (file_conversion.PhotonHDF5Reader attribute) (file_conversion.Pt3Reader attribute) (thread_tasks.OpenFile attribute) _filter_numeric_data() (controllers.FilteringController static method) _find_all_cpts() (change_point.ChangePointAnalysis method) _finding (change_point.ChangePointAnalysis attribute) _get_ind() (change_point.ParticleMicrotimesSubset method)

_get_label() (controllers.FilteringController static method) _has_spectra (smsh5.Spectra property) _i (change_point.ChangePointAnalysis attribute) _is_irf (thread_tasks.OpenFile attribute) _log_l_em (grouping.ClusteringStep attribute) _main_window (exporting.Exporter attribute) (exporting.ExporterOptions attribute) _manager (threads.ProcessThread attribute) _micro_dataset (change_point.ParticleMicrotimesSubset property) _microtimes (change_point.ChangePointAnalysis property) _new_set_text() (custom_dialogs.TimedMessageBox method) _next_seg_ind() (change_point.ChangePointAnalysis method) _num_iterations (processes.ProgressTracker attribute) _num_prev_groups (grouping.ClusteringStep attribute) _num_trackers (processes.ProgressTracker attribute) _open_file() (exporting.Exporter static method) _parent (tree_model.DatasetTreeNode attribute) _particle (antibunching.AntibunchingAnalysis attribute) (change_point.ChangePointAnalysis attribute) (change_point.ChangePoints attribute) (change_point.Level attribute) (change_point.ParticleMicrotimesSubset attribute) (grouping.AHCA attribute) (grouping.ClusteringStep attribute) (smsh5.Histogram attribute) (smsh5.Spectra attribute) _processes (threads.ProcessThread attribute) _prog_fb (processes.ProcessProgress attribute) _reg_exp_validator (tcspcfit.FittingDialog attribute) _root (tree_model.DatasetTreeModel attribute) _root_was_checked (main.MainWindow attribute) _row (tree_model.DatasetTreeNode attribute) _shape (controllers.MyCrosshairOverlay attribute) _source_path (file_conversion.ConvertFileDialog attribute) _start_ind (change_point.ParticleMicrotimesSubset attribute) _status_message (threads.ProcessThread attribute) _step_value (processes.ProgressTracker attribute) _sums_sig_e (generate_sums.CPSums attribute) _sums_u_k (generate_sums.CPSums attribute) _sums_u_n_k (generate_sums.CPSums attribute) _sums_v2_k (generate_sums.CPSums attribute) _sums_v2_n_k (generate_sums.CPSums attribute) _temp_dir (processes.SingleProcess attribute) (threads.ProcessThread attribute) _text_item (controllers.RasterScanController attribute) _tmin (thread_tasks.OpenFile attribute) _version (generate_sums.CPSums attribute)

A

a (tree_model.DatasetTreeModel attribute) ab_analysis (smsh5.Particle property) abs_times (change_point.Level property) abstimes (smsh5.Particle property) abstimes() (in module smsh5_file_reader) abstimes2() (in module smsh5_file_reader) accepted_callback() (quick_roi_dialog.QuickROIDialog method) (settings_dialog.SettingsDialog method) acf (in module simdata_new) act_deselect_all() (main.MainWindow method) act_detect_remove_bursts_all() (main.MainWindow method) act_detect_remove_bursts_current() (main.MainWindow method) act_detect_remove_bursts_selected() (main.MainWindow method) act_filtering_and_normalization_dialog() (main.MainWindow method) act_invert_selection() (main.MainWindow method) act_open_h5() (main.MainWindow method) act_open_settings_dialog() (main.MainWindow method) act_remove_bursts_all() (main.MainWindow method) act_remove_bursts_current() (main.MainWindow method) act_remove_bursts_selected() (main.MainWindow method) act_restore_bursts_all() (main.MainWindow method) act_restore_bursts_current() (main.MainWindow method) act_restore_bursts_selected() (main.MainWindow method) act_save_analysis() (main.MainWindow method) act_save_selected() (main.MainWindow method) act_select_all() (main.MainWindow method) act_set_startpoint() (main.MainWindow method) act_switch_all() (main.MainWindow method) act_switch_selected() (main.MainWindow method) act_trim() (main.MainWindow method) active_threads (main.MainWindow attribute) add_all_nodes() (main.MainWindow method) add_all_particlenodes (signals.WorkerSignals attribute) (signals.WorkerSigPassType attribute) add_all_particlenodes() (processes.PassSigFeedback method) add_dataset() (main.MainWindow method) add_datasetindex (signals.WorkerSignals attribute) (signals.WorkerSigPassType attribute) add_datasetnode() (processes.PassSigFeedback method) add_irf (signals.WorkerSignals attribute) (signals.WorkerSigPassType attribute) add_irf() (controllers.LifetimeController method) (processes.PassSigFeedback method) add_max() (processes.ProcessProgFeedback method) add_node() (main.MainWindow method) add_particle_to_h5() (file_conversion.Pt3Reader method) add_particlenode (signals.WorkerSignals attribute) (signals.WorkerSigPassType attribute) add_particlenode() (processes.PassSigFeedback method) add_progress (signals.ProcessThreadSignals attribute) add_tasks() (threads.ProcessThread method)

add_tasks_from_methods() (threads.ProcessThread method) addChild() (tree_model.DatasetTreeModel method) (tree_model.DatasetTreeNode method) AddMax (processes.ProcessProgressCmd attribute) (thread_commands.ProgressCmd attribute) addopt (main.MainWindow attribute) (tcspcfit.FittingParameters attribute) ae (tree_model.DatasetTreeModel attribute) after_show() (main.MainWindow method) ahc() (grouping.ClusteringStep method) AHCA (class in grouping) ahca (smsh5.GlobalParticle attribute) all_bic_plots (controllers.GroupingController attribute) all_last_solutions (controllers.GroupingController attribute) all_raster_scans (smsh5.H5dataset attribute) all_should_apply (controllers.LifetimeController attribute) all_sums (smsh5.H5dataset attribute) amp (in module simdata_new) (smsh5.Histogram attribute) (tcspcfit.FittingParameters attribute) (tcspcfit.FluoFit attribute) amp_edits (tcspcfit.FittingDialog attribute) amp_max_edits (tcspcfit.FittingDialog attribute) amp_min_edits (tcspcfit.FittingDialog attribute) ampmax (tcspcfit.FluoFit attribute) ampmin (tcspcfit.FluoFit attribute) ampparam (main.MainWindow attribute) antibunch_controller (main.MainWindow attribute) antibunching module AntibunchingAnalysis (class in antibunching) AntibunchingController (class in controllers) any_int_plot_double_click() (controllers.IntController method) any_particle_text_plot (exporting.ExporterOptions property) apply_autoproxy_fix() (in module processes) apply_filters() (controllers.FilteringController method) apply_groups() (controllers.GroupingController method) apply_normalization() (controllers.FilteringController method) apply_roi() (controllers.LifetimeController method) args (processes.ProcessProgressTask attribute) (processes.ProcessTask attribute) aspectLocked (controllers.MyCrosshairOverlay attribute) auto_num_bins_changed() (controllers.FilteringController method) auto_progress (signals.WorkerSignals attribute) (signals.WorkerSigPassType attribute) auto_resolve_levels (settings_dialog.Settings attribute) autoend (tcspcfit.FittingParameters attribute) AutoProxy() (in module processes) autostart (tcspcfit.FittingParameters attribute) avtau (smsh5.Histogram attribute) avtaustd (smsh5.Histogram attribute)

B

BACKGROUND_SECTION_LENGTH (in module tcspcfit) backup (grouping.AHCA attribute) best_grouping_ind (smsh5.GlobalParticle property) (smsh5.Particle property) best_step (grouping.AHCA property) best_step_ind (grouping.AHCA attribute) bg (smsh5.Histogram attribute) (tcspcfit.FluoFit attribute) bg_edits (tcspcfit.FittingDialog attribute) bg_est (in module simdata_new) bg_n (tcspcfit.FluoFit attribute) bic (grouping.ClusteringStep attribute) bic_plot_widget (controllers.GroupingController attribute) bic_scatter_plot (controllers.GroupingController attribute) bics (grouping.AHCA attribute) bin_all() (in module thread_tasks) bin_all_func (thread_tasks.BinAll attribute)

bin_all_ints() (smsh5.H5dataset method) bin_size (signals.WorkerSignals attribute) (signals.WorkerSigPassType attribute) (thread_tasks.BinAll attribute) (threads.WorkerBinAll attribute) bin_size() (processes.PassSigFeedback method) BinAll (class in thread_tasks) binall_func (threads.WorkerBinAll attribute) binall_thread_complete() (controllers.IntController method) binints() (smsh5.Particle method) bins (controllers.AntibunchingController attribute) binsize (smsh5.Trace attribute) bit (dbg.MemSizeType attribute) build_global() (controllers.GroupingController method) burst_levels (change_point.ChangePoints attribute) (smsh5.Particle property) bursts_deleted (change_point.ChangePoints attribute) byte (dbg.MemSizeType attribute)

C

calc_and_store_sums() (in module generate_sums) calc_bic() (grouping.ClusteringStep method) calc_int_bounds() (grouping.ClusteringStep method) calc_mean_std() (change_point.ChangePoints method) calc_step_value() (processes.ProgressTracker method) calc_store_sums() (main.MainWindow method) calculate_bg() (tcspcfit.FluoFit method) calculate_boundaries() (tcspcfit.FluoFit static method) card_selected() (main.MainWindow method) centre (in module simdata_new) chA (in module convert_koenderink), [1] change_bulk_edt() (file_conversion.ConvertFileDialog method) change_content() (custom_dialogs.TimedMessageBox method) change_irf_start() (controllers.LifetimeController method) change_plot_type() (controllers.FilteringController method) change_point module change_spectra_edt() (file_conversion.ConvertFileDialog method) ChangePointAnalysis (class in change_point) ChangePoints (class in change_point) channelwidth (in module simdata_new) (smsh5.H5dataset attribute) (tcspcfit.FluoFit attribute) chB (in module convert_koenderink), [1] check_burst() (change_point.ChangePoints method) check_fbk_queue() (threads.ProcessThread method) check_ready() (file_conversion.ConvertFileDialog method) check_rois_and_set_label() (controllers.GroupingController method) checked() (tree_model.DatasetTreeNode method) child() (tree_model.DatasetTreeNode method) childCount() (tree_model.DatasetTreeNode method) chisq (in module simdata_new) (smsh5.Histogram attribute) (tcspcfit.FluoFit attribute) ChiSquared (controllers.PlotFeature attribute) chR (in module convert_koenderink), [1] clear_and_backup_results() (grouping.AHCA method) clear_bic() (controllers.GroupingController method) close_file() (main.MainWindow method) closeEvent() (custom_dialogs.TimedMessageBox method) ClusteringStep (class in grouping) colorshift() (in module tcspcfit) columnCount() (tree_model.DatasetTreeModel method) (tree_model.DatasetTreeNode method) comment_field (file_conversion.PhotonHDF5Reader attribute) Complete (processes.ProcessProgressCmd attribute) (thread_commands.ProgressCmd attribute) conf (threads.WorkerResolveLevels attribute) conf_regions (change_point.ChangePointAnalysis attribute) (change_point.ChangePoints property) confidence (change_point.ChangePointAnalysis attribute) (change_point.ChangePoints property) confidence_index (controllers.IntController attribute) (main.MainWindow attribute) contributing_particles_dataset_inds (smsh5.GlobalParticle attribute) controllers module convd (in module simdata_new), [1] (smsh5.Histogram attribute) (tcspcfit.FluoFit attribute)

convd_t (smsh5.Histogram attribute) convdnoise (in module simdata_new) convdsum (in module simdata_new) convert() (file_conversion.ConvertFileDialog method) convert_file_dialog() (main.MainWindow method) convert_file_dialog_file (in module file_conversion) convert_koenderink module convert_schlau-cohen module convert_schlau_cohen_irf module convert_ui module convert_ui() (in module convert_ui) convert_v1_05_to_v1_06() (in module save_and_load) ConvertFileDialog (class in file_conversion) corr (controllers.AntibunchingController attribute) corr_bins (antibunching.AntibunchingAnalysis attribute) corr_events (antibunching.AntibunchingAnalysis attribute) corr_hist (antibunching.AntibunchingAnalysis attribute) corr_plot (controllers.AntibunchingController attribute) corr_sum_plot (controllers.AntibunchingController attribute) corr_sum_widget (controllers.AntibunchingController attribute) corr_thread_complete() (controllers.AntibunchingController method) corr_widget (controllers.AntibunchingController attribute) correlate_particle() (antibunching.AntibunchingAnalysis method) correlate_times() (antibunching.AntibunchingAnalysis static method) (in module convert_koenderink) cpa_has_run (change_point.ChangePoints property) (smsh5.H5dataset attribute) cpa_min_boundary_offset (settings_dialog.Settings attribute) cpa_min_num_photons (settings_dialog.Settings attribute) CPSums (class in generate_sums) cpt_inds (change_point.ChangePointAnalysis attribute) (change_point.ChangePoints property) cpts (smsh5.GlobalParticle attribute) create_crosshair_item() (controllers.RasterScanController static method) create_manager() (in module processes) create_queue() (in module processes) create_text_item() (controllers.RasterScanController static method) creator_name (file_conversion.PhotonHDF5Reader attribute) CSVReader (class in file_conversion) current2data() (smsh5.Particle method) current_data_points_to_use (controllers.FilteringController attribute) current_dataset (main.MainWindow attribute) current_group2data() (smsh5.Particle method) current_particle (main.MainWindow attribute) current_particles (controllers.FilteringController attribute) current_particles_to_use (controllers.FilteringController attribute) current_plot_type (controllers.FilteringController attribute) current_progress (main.MainWindow attribute) currentparticle (threads.WorkerFitLifetimes attribute) (threads.WorkerGrouping attribute) (threads.WorkerResolveLevels attribute) custom_dialogs module

D

Data (file_manager.Type attribute) data (smsh5.Spectra property) (threads.WorkerFitLifetimes attribute) (threads.WorkerGrouping attribute) (threads.WorkerResolveLevels attribute) data() (tree_model.DatasetTreeModel method) (tree_model.DatasetTreeNode method) data_loaded (main.MainWindow attribute) (signals.WorkerSignals attribute) (signals.WorkerSigPassType attribute) data_loaded() (processes.PassSigFeedback method) datadict (in module simdata_new) DATAFRAME_FORMATS (in module exporting) dataobj (tree_model.DatasetTreeNode attribute) dataset (save_and_load.SaveAnalysisWorker attribute) (smsh5.Particle attribute) (smsh5.RasterScan property) (thread_tasks.BinAll attribute) (threads.WorkerBinAll attribute) dataset_ind (smsh5.Particle attribute) DatasetTreeModel (class in tree_model) DatasetTreeNode (class in tree_model) datatype (tree_model.DatasetTreeNode attribute) date() (in module smsh5_file_reader) dbg module decay_roi_end_ns (smsh5.Histogram attribute) decay_roi_start_ns (smsh5.Histogram attribute) decaybg (main.MainWindow attribute) (tcspcfit.FittingParameters attribute)

default_button (custom_dialogs.TimedMessageBox attribute) default_settings (settings_dialog.SettingsDialog attribute) default_settings_dict (settings_dialog.Settings attribute) define_levels() (change_point.ChangePointAnalysis method) description() (in module smsh5_file_reader) detect_remove_bursts() (main.MainWindow method) df_len() (tcspcfit.FluoFit static method) differences (in module simdata_new) difftime (controllers.AntibunchingController property) disable_amps() (tcspcfit.FittingDialog method) display_data() (main.MainWindow method) display_on() (in module main) display_reset() (in module main) distribution_item (controllers.FilteringController attribute) Docs (file_manager.Type attribute) dont_send (processes.ProcessTaskResult attribute) dtau (tcspcfit.FluoFit attribute) durbinwatson() (tcspcfit.FluoFit method) DW (controllers.PlotFeature attribute) dw (smsh5.Histogram attribute) (tcspcfit.FluoFit attribute) dw_bound (smsh5.Histogram attribute) (tcspcfit.FluoFit attribute) dwell_time (smsh5.GlobalParticle attribute) dwell_time_ns (change_point.Level attribute) (grouping.GlobalLevel attribute) dwell_time_roi (smsh5.Particle property) dwell_time_s (change_point.Level property) (grouping.GlobalLevel property) (grouping.Group property) (smsh5.Particle property)

E

e (tree_model.DatasetTreeModel attribute) emc() (grouping.ClusteringStep method) enable_sim_vals() (tcspcfit.FittingDialog method) end (main.MainWindow attribute) (tcspcfit.FittingParameters attribute) end() (processes.ProcessProgFeedback method) end_at_photon (change_point.ChangePointAnalysis attribute) end_progress (signals.ProcessThreadSignals attribute) (signals.WorkerSignals attribute) (signals.WorkerSigPassType attribute) end_progress() (main.MainWindow method) end_time_s (threads.WorkerResolveLevels attribute) endpoint (tcspcfit.FluoFit attribute) Err (class in change_point) error (signals.ProcessThreadSignals attribute) (signals.WorkerSignals attribute) (signals.WorkerSigPassType attribute) error() (controllers.AntibunchingController method) (controllers.GroupingController method) (controllers.IntController method) (controllers.LifetimeController method) error_handler() (main.MainWindow method) estimate_bg() (tcspcfit.FluoFit static method) ex_corr_hists (exporting.ExporterOptions property) ex_df_format (exporting.ExporterOptions property) ex_df_grouped_levels (exporting.ExporterOptions property) ex_df_grouped_levels_lifetimes (exporting.ExporterOptions property) ex_df_grouping_info (exporting.ExporterOptions property) ex_df_levels (exporting.ExporterOptions property) ex_df_levels_lifetimes (exporting.ExporterOptions property) ex_global_grouped_levels (exporting.ExporterOptions property) ex_grouped_levels (exporting.ExporterOptions property) ex_grouping_info (exporting.ExporterOptions property) ex_grouping_results (exporting.ExporterOptions property) ex_hist (exporting.ExporterOptions property) ex_levels (exporting.ExporterOptions property) ex_lifetime (exporting.ExporterOptions property) ex_plot_corr_hists (exporting.ExporterOptions property) ex_plot_grouping_bics (exporting.ExporterOptions property) ex_plot_intensities (exporting.ExporterOptions property) ex_plot_intensities_only (exporting.ExporterOptions property)

ex_plot_intensities_with_levels (exporting.ExporterOptions property) ex_plot_intensities_with_levels_and_groups (exporting.ExporterOptions property) ex_plot_lifetimes (exporting.ExporterOptions property) ex_plot_lifetimes_fit_and_residuals (exporting.ExporterOptions property) ex_plot_lifetimes_hist_only (exporting.ExporterOptions property) ex_plot_lifetimes_only_groups (exporting.ExporterOptions property) ex_plot_lifetimes_with_fit (exporting.ExporterOptions property) ex_plot_raster_scans (exporting.ExporterOptions property) ex_plot_spectra (exporting.ExporterOptions property) ex_raster_scan_2d (exporting.ExporterOptions property) ex_spectra_2d (exporting.ExporterOptions property) ex_traces (exporting.ExporterOptions property) EXCLUSION_MODULES (in module dbg) EXCLUSION_TYPES (in module dbg) exec() (custom_dialogs.TimedMessageBox method) exp_trace_chb_changed() (controllers.IntController method) explore_sizes() (in module dbg) export_corr() (exporting.Exporter method) export_corr_hists() (exporting.Exporter method) export_dataframes() (exporting.Exporter method) export_grouping_info() (exporting.Exporter method) export_grouping_results() (exporting.Exporter method) export_hists() (exporting.Exporter method) export_levels() (exporting.Exporter method) export_levels_global_grouped_plot() (exporting.Exporter method) export_levels_grouped_plot() (exporting.Exporter method) export_lifetimes() (exporting.Exporter method) EXPORT_MPL_DPI (in module controllers) EXPORT_MPL_HEIGHT (in module controllers) EXPORT_MPL_WIDTH (in module controllers) export_path (in module convert_schlau-cohen) (in module convert_schlau_cohen_irf) export_plot_item() (in module controllers) export_raster_scan_2d() (exporting.Exporter method) export_spectra_2d() (exporting.Exporter method) export_trace() (exporting.Exporter method) EXPORT_WIDTH (in module controllers) Exporter (class in exporting) ExporterOptions (class in exporting) exporting module ExportWorker (class in exporting)

F

f_dir (exporting.Exporter attribute) (exporting.ExportWorker attribute) FakeCpts (class in smsh5) fbq (processes.PassSigFeedback attribute) (processes.ProcessProgFeedback attribute) feedback_queue (processes.SingleProcess attribute) (threads.ProcessThread attribute) file (in module simdata_new) (smsh5.H5dataset property) (smsh5.Particle property) file_conversion module file_group (smsh5.Particle property) file_manager module file_path (file_conversion.FileReader attribute) (save_and_load.LoadAnalysisWorker attribute) (thread_tasks.OpenFile property) file_time (file_conversion.PhotonHDF5Reader attribute) file_version (smsh5.H5dataset attribute) (smsh5.Particle attribute) file_version() (in module smsh5_file_reader) filedir (in module convert_schlau-cohen) (in module convert_schlau_cohen_irf) FileReader (class in file_conversion) filter_option_changed() (controllers.FilteringController method) filter_settings (controllers.FilteringController attribute) filter_with_settings() (exporting.Exporter static method) filtering_controller (main.MainWindow attribute) FilteringController (class in controllers) finished (signals.ProcessThreadSignals attribute) first (controllers.LifetimeController attribute) (grouping.ClusteringStep attribute) first_group_level_ind_in_roi (smsh5.Particle property) first_level_ind_in_roi (smsh5.Particle property) fit (in module simdata_new) fit() (smsh5.Histogram method)

fit_decay (smsh5.Histogram attribute) fit_intensity_lifetime() (controllers.FilteringController method) fit_lifetimes_func (threads.WorkerFitLifetimes attribute) fit_part_and_levels() (smsh5.ParticleAllHists method) fit_result (controllers.FilteringController attribute) fitfunc() (in module simdata_new) fitfunc1() (in module simdata_new) fitfunc_ls() (tcspcfit.OneExp method) (tcspcfit.ThreeExp method) (tcspcfit.TwoExp method) fitfunc_ml() (tcspcfit.OneExp method) (tcspcfit.ThreeExp method) (tcspcfit.TwoExp method) fitparam (controllers.LifetimeController attribute) (threads.WorkerFitLifetimes attribute) fitparamdialog (controllers.LifetimeController attribute) fitted (smsh5.Histogram attribute) fitted_with_roi (smsh5.Histogram attribute) fitting_dialog_file (in module tcspcfit) fitting_finished (signals.WorkerSignals attribute) (signals.WorkerSigPassType attribute) fitting_thread_complete() (controllers.LifetimeController method) FittingDialog (class in tcspcfit) FittingParameters (class in tcspcfit) flags() (tree_model.DatasetTreeModel method) FluoFit (class in tcspcfit) folder_path() (in module file_manager) force_stop (threads.ProcessThread attribute) format (file_conversion.FileReader attribute) found_cpts (change_point.ChangePointAnalysis attribute) fpd (tcspcfit.FittingParameters attribute) fwhm (in module simdata_new) (smsh5.Histogram attribute) (tcspcfit.FittingParameters attribute) (tcspcfit.FluoFit attribute) fwhmmax (tcspcfit.FluoFit attribute) fwhmmin (tcspcfit.FluoFit attribute)

G

gather_replace_results() (controllers.AntibunchingController method) (controllers.GroupingController method) (controllers.IntController method) (controllers.LifetimeController method) gauss (in module simdata_new), [1] generate_sums module get() (settings_dialog.Settings method) get_all_dict() (settings_dialog.Settings method) get_all_feature_data() (controllers.FilteringController method) get_all_filter() (controllers.FilteringController method) get_all_levels_with_lifetime() (controllers.FilteringController method) get_all_raster_scans() (smsh5.H5dataset method) get_bin() (controllers.IntController method) get_checked() (main.MainWindow method) get_checked_nums() (main.MainWindow method) get_checked_particles() (main.MainWindow method) get_data() (controllers.FilteringController method) get_default_settings() (settings_dialog.Settings method) get_dict() (controllers.PlotFeature class method) get_empty_queue_exception() (in module processes) get_feature_data() (controllers.FilteringController method) get_filter_settings() (controllers.FilteringController method) get_from_gui() (tcspcfit.FittingParameters method) get_gui_confidence() (controllers.IntController method) get_list() (controllers.PlotFeature class method) get_max_num_processes() (in module processes) get_mode() (selection.RangeSelectionDialog method) get_particle() (tree_model.DatasetTreeModel method) get_path_type_str() (in module file_manager) get_selection() (selection.RangeSelectionDialog method) get_set() (generate_sums.CPSums method) get_sig_e() (generate_sums.CPSums method) get_size() (in module dbg) get_tau_a() (change_point.TauData method) get_tau_b() (change_point.TauData method) get_two_features() (controllers.FilteringController method) get_u_k() (generate_sums.CPSums method) get_u_k_n() (generate_sums.CPSums method) get_v2_k() (generate_sums.CPSums method) get_v2_k_n() (generate_sums.CPSums method) getfromdialog() (tcspcfit.FittingParameters method) getparams() (tcspcfit.FittingDialog method) gigabit (dbg.MemSizeType attribute) gigabyte (dbg.MemSizeType attribute) global_gather_replace_results() (controllers.GroupingController method) global_group_levels (smsh5.Particle property) global_grouping_thread_complete() (controllers.GroupingController method) global_levels (smsh5.GlobalParticle property) global_particle (smsh5.H5dataset attribute) (smsh5.Particle property) GlobalLevel (class in grouping) GlobalParticle (class in smsh5) Group (class in grouping) group_2_levels() (grouping.ClusteringStep method) group_hists (smsh5.ParticleAllHists attribute) group_ind (change_point.Level attribute) (grouping.GlobalLevel attribute) (grouping.Group attribute) group_int_widget (controllers.IntController attribute) group_ints (grouping.ClusteringStep property) group_level_dwelltimes (grouping.ClusteringStep property) group_level_ints (grouping.ClusteringStep property) group_levels (grouping.ClusteringStep attribute) (smsh5.Particle property) group_levels_roi (smsh5.Particle property) group_microtimes (grouping.Group property) group_num_levels (grouping.ClusteringStep property) group_selected (threads.WorkerGrouping attribute) group_times_ns (grouping.Group property) group_total_dwelltime (grouping.ClusteringStep property) grouped_with_roi (grouping.AHCA attribute) (smsh5.Particle property)

grouping module grouping_bics (smsh5.GlobalParticle property) (smsh5.Particle property) grouping_controller (main.MainWindow attribute) grouping_finished (signals.WorkerSignals attribute) (signals.WorkerSigPassType attribute) grouping_func (threads.WorkerGrouping attribute) grouping_num_groups (smsh5.GlobalParticle property) (smsh5.Particle property) grouping_selected_ind (smsh5.GlobalParticle property) (smsh5.Particle property) grouping_thread_complete() (controllers.GroupingController method) GroupingController (class in controllers) groups (grouping.ClusteringStep attribute) (smsh5.GlobalParticle property) (smsh5.Particle property) groups_bounds (smsh5.GlobalParticle property) (smsh5.Particle property) groups_have_hists (grouping.ClusteringStep attribute) groups_hist_plot (controllers.IntController attribute) groups_hist_widget (controllers.IntController attribute) groups_int_plot (controllers.IntController attribute) groups_ints (smsh5.GlobalParticle property) (smsh5.Particle property) groups_to_df() (exporting.Exporter static method) gui_apply_bin() (controllers.IntController method) gui_apply_bin_all() (controllers.IntController method) gui_apply_groups_all() (controllers.GroupingController method) gui_apply_groups_current() (controllers.GroupingController method) gui_apply_groups_selected() (controllers.GroupingController method) gui_apply_roi_all() (controllers.LifetimeController method) gui_apply_roi_current() (controllers.LifetimeController method) gui_apply_roi_selected() (controllers.LifetimeController method) gui_chb_show_global_groups() (controllers.IntController method) gui_chb_show_groups() (controllers.IntController method) gui_correlate_all() (controllers.AntibunchingController method) gui_correlate_current() (controllers.AntibunchingController method) gui_correlate_selected() (controllers.AntibunchingController method) gui_curr_chb() (controllers.AntibunchingController method) gui_export() (main.MainWindow method) gui_export_all() (main.MainWindow method) gui_export_current() (main.MainWindow method) gui_export_selected() (main.MainWindow method) gui_fit_all() (controllers.LifetimeController method) gui_fit_current() (controllers.LifetimeController method) gui_fit_levels() (controllers.LifetimeController method) gui_fit_param() (controllers.LifetimeController method) gui_fit_selected() (controllers.LifetimeController method) gui_group_all() (controllers.GroupingController method) gui_group_current() (controllers.GroupingController method) gui_group_global() (controllers.GroupingController method) gui_group_selected() (controllers.GroupingController method) gui_group_use_roi() (main.MainWindow method) gui_jump_to_groups() (controllers.LifetimeController method) gui_load_irf() (controllers.LifetimeController method) gui_next_lev() (controllers.LifetimeController method) gui_plot_intensity_clicked() (main.MainWindow method) gui_plot_lifetime_clicked() (main.MainWindow method) gui_prev_lev() (controllers.LifetimeController method) gui_quick_roi() (controllers.IntController method) gui_reset_roi_all() (quick_roi_dialog.QuickROIDialog method) gui_reset_roi_current() (quick_roi_dialog.QuickROIDialog method) gui_reset_roi_selected() (quick_roi_dialog.QuickROIDialog method) gui_resolve() (controllers.IntController method) gui_resolve_all() (controllers.IntController method) gui_resolve_selected() (controllers.IntController method) gui_rot_roi() (controllers.SpectraController method) gui_select_groups_changed() (main.MainWindow method) gui_show_hide_residuals() (controllers.LifetimeController method) gui_sub_bkg() (controllers.SpectraController method) gui_use_roi_changed() (controllers.LifetimeController method) gui_whole_trace() (controllers.LifetimeController method)

H

H5dataset (class in smsh5) h5dataset (smsh5.RasterScan attribute) h5dataset_index (smsh5.RasterScan attribute) halfmaxind (in module simdata_new) has_asizeof (in module dbg) has_burst (change_point.ChangePoints attribute) (smsh5.Particle property) has_corr (antibunching.AntibunchingAnalysis attribute) (smsh5.H5dataset attribute) (smsh5.Particle property) has_fit (controllers.FilteringController attribute) has_global_grouping (smsh5.Particle property) has_group_hists (smsh5.ParticleAllHists attribute) has_groups (grouping.AHCA attribute) (smsh5.GlobalParticle property) (smsh5.H5dataset attribute) (smsh5.Particle property) has_intensity() (in module smsh5_file_reader) has_irf (smsh5.H5dataset attribute) has_level_hists (smsh5.ParticleAllHists attribute)

has_levels (change_point.ChangePointAnalysis attribute) (change_point.ChangePoints property) (smsh5.FakeCpts attribute) (smsh5.GlobalParticle property) (smsh5.H5dataset attribute) (smsh5.Particle property) has_lifetimes (smsh5.H5dataset attribute) has_num_iterations (processes.ProgressTracker attribute) has_power_measurement() (in module smsh5_file_reader) has_raster_scan() (in module smsh5_file_reader) has_run (change_point.ChangePointAnalysis attribute) has_spectra (smsh5.H5dataset attribute) (smsh5.Particle property) has_spectra() (in module smsh5_file_reader) hide_show_chb() (controllers.IntController method) hist_chb_changed() (controllers.IntController method) histogram (change_point.Level attribute) Histogram (class in smsh5) histogram (grouping.Group attribute) (smsh5.Particle property)

I

Icons (file_manager.Type attribute) icons_rc module in_mb() (dbg.MemSize method) index() (tree_model.DatasetTreeModel method) int_hist_container (controllers.IntController attribute) int_hist_line (controllers.IntController attribute) int_hist_plot (controllers.IntController attribute) int_hist_widget (controllers.IntController attribute) int_level_info_container (controllers.IntController attribute) int_level_line (controllers.IntController attribute) int_lifetime_fit_item (controllers.FilteringController attribute) int_p_s (grouping.GlobalLevel attribute) (grouping.Group property) int_plot (controllers.IntController attribute) int_ROI (controllers.IntController attribute) int_trace() (in module smsh5_file_reader) int_widget (controllers.IntController attribute) IntController (class in controllers) intdata (smsh5.Trace attribute) integration_time (smsh5.RasterScan attribute) Intensity (controllers.PlotFeature attribute) intensity_controller (main.MainWindow attribute)

inttimes (smsh5.Trace attribute) irf (in module simdata_new) (smsh5.H5dataset attribute) (tcspcfit.FittingParameters attribute) (thread_tasks.OpenFile property) irf_loaded (controllers.LifetimeController attribute) (main.MainWindow attribute) irf_shift_edits (tcspcfit.FittingDialog attribute) irf_t (smsh5.H5dataset attribute) irfbg (main.MainWindow attribute) (smsh5.Histogram attribute) (tcspcfit.FittingParameters attribute) (tcspcfit.FluoFit attribute) irfdiff (controllers.AntibunchingController attribute) IRFShift (controllers.PlotFeature attribute) is_fit (tcspcfit.FluoFit attribute) is_for_roi (smsh5.Histogram attribute) is_global (smsh5.GlobalParticle attribute) is_global_level (grouping.GlobalLevel attribute) is_normalized (controllers.FilteringController attribute) is_running (threads.ProcessThread attribute) iterate() (processes.ProcessProgress method) (processes.ProgressTracker method)

K

kilobit (dbg.MemSizeType attribute)

kilobyte (dbg.MemSizeType attribute)

L

l (tree_model.DatasetTreeModel attribute) la (tree_model.DatasetTreeModel attribute) lae (tree_model.DatasetTreeModel attribute) last (grouping.ClusteringStep attribute) last_group_level_ind_in_roi (smsh5.Particle property) last_level_ind_in_roi (smsh5.Particle property) le (tree_model.DatasetTreeModel attribute) Level (class in change_point) level (smsh5.Histogram attribute) level_dwelltimes (change_point.ChangePointAnalysis property) (change_point.ChangePoints property) (smsh5.Particle property) level_dwelltimes_roi (smsh5.Particle property) level_group_ind (grouping.ClusteringStep attribute) level_hists (smsh5.ParticleAllHists attribute) level_inds (change_point.Level attribute) level_info_chb_changed() (controllers.IntController method) level_info_text (controllers.IntController attribute) level_ints (change_point.ChangePointAnalysis property) (change_point.ChangePoints property) (smsh5.Particle property) level_ints_roi (smsh5.Particle property) level_particle_dataset_inds (smsh5.GlobalParticle property) level_resolved (signals.WorkerSignals attribute) (signals.WorkerSigPassType attribute) levelhist() (smsh5.Histogram method) levels (change_point.ChangePointAnalysis attribute) (change_point.ChangePoints property) (smsh5.FakeCpts attribute) (smsh5.GlobalParticle attribute) (smsh5.Particle property) levels2data() (smsh5.Particle method) levels_roi (smsh5.Particle property) levels_roi_force (smsh5.Particle property) levels_to_df() (exporting.Exporter method) levels_to_use (controllers.FilteringController attribute) life_hist_plot (controllers.LifetimeController attribute) Lifetime (controllers.PlotFeature attribute) lifetime_controller (main.MainWindow attribute) (tcspcfit.FittingDialog attribute) lifetime_hist_widget (controllers.LifetimeController attribute) lifetime_plot (controllers.IntController attribute) lifetime_widget (controllers.IntController attribute)

LifetimeController (class in controllers) lifetimes2data() (smsh5.Particle method) list_text (controllers.RasterScanController attribute) load_analysis() (in module save_and_load) load_data() (thread_tasks.OpenFile method) load_file() (smsh5.H5dataset method) load_settings() (change_point.ChangePointAnalysis method) (settings_dialog.SettingsDialog method) (tcspcfit.FittingDialog method) (tcspcfit.FluoFit method) load_settings_from_file() (settings_dialog.Settings method) LoadAnalysisWorker (class in save_and_load) locate_uuid() (in module processes) lock (exporting.Exporter attribute) (exporting.ExportWorker attribute) (main.MainWindow attribute) logger (in module antibunching) (in module change_point) (in module controllers) (in module exporting) (in module file_conversion) (in module file_manager) (in module generate_sums) (in module grouping) (in module main) (in module processes) (in module settings_dialog) (in module signals) (in module smsh5) (in module tcspcfit) (in module thread_tasks) (in module threads) (in module tree_model) lower (change_point.Err attribute) lt_bg_percent (settings_dialog.Settings attribute) lt_end_multiple (settings_dialog.Settings attribute) lt_end_percent (settings_dialog.Settings attribute) lt_minimum_decay_window (settings_dialog.Settings attribute) lt_moving_avg_window (settings_dialog.Settings attribute) lt_start_percent (settings_dialog.Settings attribute) lt_use_moving_avg (settings_dialog.Settings attribute) lvls (grouping.Group attribute) lvls_inds (grouping.Group attribute)

M

macro_times (file_conversion.PhotonHDF5Reader attribute) main module main() (in module change_point) (in module generate_sums) (in module main) main_window (controllers.AntibunchingController attribute) (controllers.FilteringController attribute) (controllers.GroupingController attribute) (controllers.IntController attribute) (controllers.LifetimeController attribute) (controllers.RasterScanController attribute) (controllers.SpectraController attribute) (exporting.Exporter property) (exporting.ExportWorker attribute) (save_and_load.LoadAnalysisWorker attribute) (save_and_load.SaveAnalysisWorker attribute) main_window_file (in module main) MainWindow (class in main) mainwindow (file_conversion.ConvertFileDialog attribute) (quick_roi_dialog.QuickROIDialog attribute) (settings_dialog.SettingsDialog attribute) (tcspcfit.FittingDialog attribute) make_model() (tcspcfit.FittingDialog method) makeconvd() (tcspcfit.FluoFit method) makegrouphists() (smsh5.Particle method) makegrouplevelhists() (smsh5.Particle method) makehistogram() (smsh5.Particle method) makehistograms() (smsh5.H5dataset method) (smsh5.Particle method) makelevelhists() (smsh5.Particle method) makerow() (in module tcspcfit) mat (in module convert_schlau-cohen) (in module convert_schlau_cohen_irf) max_continuous_zeros() (in module tcspcfit) max_jm() (in module grouping) maximum_likelihood (tcspcfit.FittingParameters attribute) meas_bef_bg (tcspcfit.FluoFit attribute) meas_std (tcspcfit.FluoFit attribute) meas_sum (tcspcfit.FluoFit attribute) measured_not_normalized (tcspcfit.FluoFit attribute) measured_unbounded (tcspcfit.FluoFit attribute) megabit (dbg.MemSizeType attribute) megabyte (dbg.MemSizeType attribute) MemSize (class in dbg) MemSizeType (class in dbg) message_posttime (custom_dialogs.TimedMessageBox attribute) message_pretime (custom_dialogs.TimedMessageBox attribute) method (tcspcfit.FluoFit attribute) method_name (processes.ProcessTask attribute) micro_times (file_conversion.PhotonHDF5Reader attribute) microtimes (change_point.Level attribute) (in module simdata_new), [1] (smsh5.Histogram attribute) (smsh5.Particle property)

microtimes() (in module smsh5_file_reader) microtimes2() (in module smsh5_file_reader) microtimes_particle_inds_pairs (grouping.GlobalLevel attribute) microtimes_roi (smsh5.Particle property) minfunc() (in module tcspcfit) ml_curve_fit() (in module tcspcfit) mode (exporting.Exporter attribute) (exporting.ExportWorker attribute) (threads.WorkerFitLifetimes attribute) (threads.WorkerGrouping attribute) (threads.WorkerResolveLevels attribute) mode_changed() (quick_roi_dialog.QuickROIDialog method) module antibunching change_point controllers convert_koenderink convert_schlau-cohen convert_schlau_cohen_irf convert_ui custom_dialogs dbg exporting file_conversion file_manager generate_sums grouping icons_rc main my_logger processes quick_roi_dialog save_and_load selection settings_dialog signals simdata_new smsh5 smsh5_file_reader tcspcfit thread_commands thread_tasks threads tree_model moving_avg() (in module tcspcfit) mw (exporting.Exporter property) my_logger module MyCrosshairOverlay (class in controllers) myPlotROI (class in controllers)

N

name (smsh5.GlobalParticle attribute) (smsh5.H5dataset attribute) (smsh5.Particle attribute) new_task_obj (processes.ProcessTaskResult attribute) none (tree_model.DatasetTreeModel attribute) normalize_amps (tcspcfit.FittingParameters attribute) (tcspcfit.FluoFit attribute) num_cpts (change_point.ChangePointAnalysis attribute) (change_point.ChangePoints property) (smsh5.FakeCpts attribute) num_groups (grouping.ClusteringStep attribute) (smsh5.GlobalParticle property) (smsh5.Particle property) num_iterations (processes.ProgressTracker property) num_levels (change_point.ChangePointAnalysis attribute) (change_point.ChangePoints property) (smsh5.FakeCpts attribute) (smsh5.GlobalParticle attribute) (smsh5.Particle property)

num_levels_roi (smsh5.GlobalParticle attribute) (smsh5.Particle property) num_parts (smsh5.H5dataset attribute) num_parts() (in module smsh5_file_reader) num_photons (change_point.ChangePointAnalysis attribute) (change_point.Level attribute) (grouping.GlobalLevel attribute) (grouping.Group property) (smsh5.GlobalParticle attribute) num_photons_roi (smsh5.Particle property) num_photons_used (smsh5.Histogram attribute) num_steps (grouping.AHCA attribute) num_trackers (processes.ProgressTracker property) numexp (smsh5.Histogram attribute) (smsh5.Particle property) (smsh5.ParticleAllHists attribute) (tcspcfit.FittingParameters attribute) (tcspcfit.FluoFit attribute)

O

obj (processes.ProcessTask attribute) OneExp (class in tcspcfit) open_file_error() (main.MainWindow method) open_file_thread_complete() (main.MainWindow method) open_h5() (thread_tasks.OpenFile method) open_irf() (thread_tasks.OpenFile method) open_save_file_version_outdated() (main.MainWindow method)

OpenFile (class in thread_tasks) openfile_finished (signals.WorkerSignals attribute) (signals.WorkerSigPassType attribute) option_linker (controllers.FilteringController attribute) options (exporting.Exporter attribute) orig_AutoProxy (in module processes) original_kwargs (smsh5.Histogram attribute)

P

p() (in module dbg) parent (file_conversion.ConvertFileDialog attribute) (quick_roi_dialog.QuickROIDialog attribute) (selection.RangeSelectionDialog attribute) (settings_dialog.SettingsDialog attribute) (tcspcfit.FittingParameters attribute) parent() (tree_model.DatasetTreeModel method) (tree_model.DatasetTreeNode method) parent_particle_dataset_ind (grouping.GlobalLevel attribute) part_group (in module convert_koenderink) part_hist (smsh5.ParticleAllHists attribute) part_index (main.MainWindow attribute) part_nodes (main.MainWindow attribute) part_uuid (smsh5.ParticleAllHists attribute) Particle (class in smsh5) particle (grouping.GlobalLevel attribute) particle() (in module smsh5_file_reader) particle_ind (change_point.Level attribute) particle_indexes (smsh5.RasterScan attribute) particle_num (smsh5.RasterScan attribute) ParticleAllHists (class in smsh5) ParticleMicrotimesSubset (class in change_point) particles (smsh5.H5dataset attribute) partnum_write (in module convert_schlau-cohen) (in module convert_schlau_cohen_irf) PassSigFeedback (class in processes) passthrough (signals.ProcessThreadSignals attribute) path() (in module file_manager) pb_defined_int_thresh (settings_dialog.Settings attribute) pb_min_dwell_time (settings_dialog.Settings attribute) pb_sigma_int_thresh (settings_dialog.Settings attribute) pb_use_changed() (settings_dialog.SettingsDialog method) pb_use_sigma_thresh (settings_dialog.Settings attribute) PhotonHDF5Reader (class in file_conversion) PhotonNumber (controllers.PlotFeature attribute) pixel_per_line (smsh5.RasterScan attribute) plot (controllers.FilteringController attribute) plot_all() (controllers.IntController method) (controllers.LifetimeController method) plot_convd (signals.WorkerSignals attribute) plot_convd() (controllers.LifetimeController method) plot_convd_export_lock (signals.WorkerSignals attribute) plot_convd_lock (signals.WorkerSignals attribute) plot_corr (signals.WorkerSignals attribute) plot_corr() (controllers.AntibunchingController method) plot_corr_export (signals.WorkerSignals attribute) plot_corr_export_lock (signals.WorkerSignals attribute) plot_corr_hists() (exporting.Exporter method) plot_corr_lock (signals.WorkerSignals attribute) plot_corr_sum() (controllers.AntibunchingController method) plot_decay (signals.WorkerSignals attribute) plot_decay() (controllers.LifetimeController method) plot_decay_and_convd() (controllers.LifetimeController method) plot_decay_convd_and_hist() (controllers.LifetimeController method) plot_decay_convd_export (signals.WorkerSignals attribute) plot_decay_convd_export_lock (signals.WorkerSignals attribute) plot_decay_convd_residuals_export (signals.WorkerSignals attribute) plot_decay_convd_residuals_export_lock (signals.WorkerSignals attribute) plot_decay_export (signals.WorkerSignals attribute) plot_decay_export_lock (signals.WorkerSignals attribute) plot_decay_lock (signals.WorkerSignals attribute) plot_distribution() (controllers.FilteringController method) plot_features() (controllers.FilteringController method) plot_fit_pen (controllers.FilteringController attribute) plot_fit_result() (controllers.FilteringController method) plot_group_bic() (controllers.GroupingController method)

plot_group_bounds() (controllers.IntController method) plot_group_bounds_export (signals.WorkerSignals attribute) plot_group_bounds_export_lock (signals.WorkerSignals attribute) plot_grouping_bic() (exporting.Exporter method) plot_grouping_bic_export (signals.WorkerSignals attribute) plot_grouping_bic_export_lock (signals.WorkerSignals attribute) plot_hist() (controllers.IntController method) plot_intensities() (exporting.Exporter method) plot_levels (signals.WorkerSignals attribute) plot_levels() (controllers.IntController method) (exporting.Exporter method) plot_levels_export (signals.WorkerSignals attribute) plot_levels_export_lock (signals.WorkerSignals attribute) plot_levels_lock (signals.WorkerSignals attribute) plot_lifetime_fit_residuals() (exporting.Exporter method) plot_lifetimes() (exporting.Exporter method) plot_pen (controllers.FilteringController attribute) plot_raster_scan() (controllers.RasterScanController method) (exporting.Exporter method) plot_raster_scan_export (signals.WorkerSignals attribute) plot_raster_scan_export_lock (signals.WorkerSignals attribute) plot_residuals() (controllers.LifetimeController method) plot_residuals_export (signals.WorkerSignals attribute) plot_residuals_export_lock (signals.WorkerSignals attribute) plot_spectra() (controllers.SpectraController method) (exporting.Exporter method) plot_spectra_export (signals.WorkerSignals attribute) plot_spectra_export_lock (signals.WorkerSignals attribute) plot_trace (signals.WorkerSignals attribute) plot_trace() (controllers.IntController method) plot_trace_export (signals.WorkerSignals attribute) plot_trace_export_lock (signals.WorkerSignals attribute) plot_trace_lock (signals.WorkerSignals attribute) plot_two_features() (controllers.FilteringController method) plot_widget (controllers.FilteringController attribute) PlotFeature (class in controllers) ploton (tcspcfit.FluoFit attribute) plots_need_to_be_updated (grouping.AHCA attribute) power_measurement() (in module smsh5_file_reader) prepare_plot_for_int_lifetime_fit() (controllers.FilteringController method) prepare_text() (in module dbg) print_size() (in module dbg) processes module ProcessProgFeedback (class in processes) ProcessProgress (class in processes) ProcessProgressCmd (class in processes) ProcessProgressTask (class in processes) ProcessSigPassTask (class in processes) ProcessTask (class in processes) ProcessTaskResult (class in processes) ProcessThread (class in threads) ProcessThreadSignals (class in signals) profile() (in module dbg) prog_fb (generate_sums.CPSums attribute) prog_sig_pass() (in module processes) progress (main.MainWindow attribute) (signals.WorkerSignals attribute) (signals.WorkerSigPassType attribute) progress_decrement (signals.WorkerSigPassType attribute) progress_tracker (thread_tasks.BinAll attribute) (thread_tasks.OpenFile attribute) ProgressCmd (class in thread_commands) ProgressTracker (class in processes) ProjectRoot (file_manager.Type attribute) pt3_file (in module file_conversion) Pt3Reader (class in file_conversion)

Q

qCleanupResources() (in module icons_rc) qInitResources() (in module icons_rc) qt_resource_data (in module icons_rc) qt_resource_name (in module icons_rc) qt_resource_struct_v1 (in module icons_rc)

qt_resource_struct_v2 (in module icons_rc) qt_version (in module icons_rc) quick_roi_dialog module quick_roi_dialog_file (in module quick_roi_dialog) QuickROIDialog (class in quick_roi_dialog)

R

r (tree_model.DatasetTreeModel attribute) ra (tree_model.DatasetTreeModel attribute) rae (tree_model.DatasetTreeModel attribute) range (smsh5.RasterScan attribute) range_selection() (main.MainWindow method) RangeSelectionDialog (class in selection) raster_scan() (in module smsh5_file_reader) raster_scan_controller (main.MainWindow attribute) raster_scan_coord() (in module smsh5_file_reader) raster_scan_coordinates (smsh5.Particle property) raster_scan_image_view (controllers.RasterScanController attribute) RasterScan (class in smsh5) RasterScanController (class in controllers) rcc_version (in module icons_rc) re (tree_model.DatasetTreeModel attribute) read_path (in module convert_schlau-cohen) (in module convert_schlau_cohen_irf) rebin_corr() (antibunching.AntibunchingAnalysis method) rebin_corrs() (controllers.AntibunchingController method) rejected_callback() (quick_roi_dialog.QuickROIDialog method) (settings_dialog.SettingsDialog method) remove_and_reset_grouping() (smsh5.Particle method) remove_bursts() (change_point.ChangePoints method) (main.MainWindow method) Reset (thread_commands.StatusCmd attribute) reset() (change_point.ChangePointAnalysis method) (processes.ProgressTracker method) reset_dataset_filter() (controllers.FilteringController method) reset_filters() (controllers.FilteringController method) reset_grouping_ind() (smsh5.Particle method) reset_gui (signals.WorkerSignals attribute) (signals.WorkerSigPassType attribute) reset_gui() (main.MainWindow method) reset_normalization() (controllers.FilteringController method) reset_roi() (quick_roi_dialog.QuickROIDialog method) reset_selected_step() (grouping.AHCA method) reset_to_default() (settings_dialog.SettingsDialog method) reset_tree (signals.WorkerSignals attribute) (signals.WorkerSigPassType attribute) reset_tree() (processes.PassSigFeedback method) resid (in module simdata_new) residual_plot (controllers.LifetimeController attribute) residual_widget (controllers.LifetimeController attribute) residuals (smsh5.Histogram attribute) (tcspcfit.FluoFit attribute) resolve_finished (signals.WorkerSignals attribute) (signals.WorkerSigPassType attribute) resolve_levels_func (threads.WorkerResolveLevels attribute) resolve_mode (controllers.AntibunchingController attribute) (controllers.IntController attribute) resolve_selected (threads.WorkerFitLifetimes attribute) (threads.WorkerResolveLevels attribute) resolve_thread_complete() (controllers.IntController method) ResourcesRoot (file_manager.Type attribute)

restore_and_delete_backup() (grouping.AHCA method) restore_bursts() (change_point.ChangePoints method) (main.MainWindow method) result (signals.WorkerSignals attribute) (signals.WorkerSigPassType attribute) result_queue (processes.SingleProcess attribute) (threads.ProcessThread attribute) results (signals.ProcessThreadSignals attribute) (threads.ProcessThread attribute) results() (tcspcfit.FluoFit method) results_gathered (controllers.AntibunchingController attribute) (controllers.IntController attribute) rg (tree_model.DatasetTreeModel attribute) rga (tree_model.DatasetTreeModel attribute) rgae (tree_model.DatasetTreeModel attribute) rge (tree_model.DatasetTreeModel attribute) rl (tree_model.DatasetTreeModel attribute) rla (tree_model.DatasetTreeModel attribute) rlae (tree_model.DatasetTreeModel attribute) rle (tree_model.DatasetTreeModel attribute) rlg (tree_model.DatasetTreeModel attribute) rlga (tree_model.DatasetTreeModel attribute) rlgae (tree_model.DatasetTreeModel attribute) rlge (tree_model.DatasetTreeModel attribute) roi_chb_changed() (controllers.IntController method) roi_region_changed() (controllers.IntController method) roi_region_photon_inds (smsh5.Particle property) roi_region_used (smsh5.Histogram attribute) roi_rotated (controllers.SpectraController attribute) rotateSnapAngle (controllers.myPlotROI attribute) row() (tree_model.DatasetTreeNode method) rowCount() (tree_model.DatasetTreeModel method) rs_integration_time() (in module smsh5_file_reader) rs_pixels_per_line() (in module smsh5_file_reader) rs_range() (in module smsh5_file_reader) rs_x_start() (in module smsh5_file_reader) rs_y_start() (in module smsh5_file_reader) run() (exporting.ExportWorker method) (processes.SingleProcess method) (save_and_load.LoadAnalysisWorker method) (save_and_load.SaveAnalysisWorker method) (threads.ProcessThread method) (threads.WorkerBinAll method) (threads.WorkerFitLifetimes method) (threads.WorkerGrouping method) (threads.WorkerResolveLevels method) run_bin_all() (thread_tasks.BinAll method) run_cpa() (change_point.ChangePointAnalysis method) (change_point.ChangePoints method) run_export() (exporting.Exporter method) run_grouping() (grouping.AHCA method) (smsh5.GlobalParticle method) run_parallel_cpa() (main.MainWindow method) RUNTIME_CONSOLE (in module dbg)

S

save_analysis() (in module save_and_load) save_and_load module save_file_version_outdated (signals.WorkerSignals attribute) SAVE_FORMAT (in module save_and_load) save_particles() (smsh5.H5dataset method) save_selected (smsh5.H5dataset attribute) save_settings_to_file() (settings_dialog.Settings method) (settings_dialog.SettingsDialog method) SaveAnalysisWorker (class in save_and_load) SAVING_VERSION (in module save_and_load) select_all_dataframes_export_options() (main.MainWindow method) select_all_export_options() (main.MainWindow method) select_all_plots_export_options() (main.MainWindow method) selected_step (grouping.AHCA property) selected_step_ind (grouping.AHCA attribute) selection module selection_changed() (main.MainWindow method) selection_dialog_path (in module selection) series_times (smsh5.Spectra property) set_all_dict() (settings_dialog.Settings method) set_bin() (controllers.IntController method) set_bin_size() (main.MainWindow method) set_data_loaded() (main.MainWindow method) set_dialog_settings() (settings_dialog.SettingsDialog method) set_export_file() (file_conversion.ConvertFileDialog method) set_export_folder() (file_conversion.ConvertFileDialog method) set_export_options() (main.MainWindow method) set_filter_settings() (controllers.FilteringController method) set_histgram() (smsh5.Particle method) set_histgram_roi() (smsh5.Particle method) set_level_resolved() (main.MainWindow method) set_levels_to_use() (controllers.FilteringController method) set_limits() (controllers.FilteringController method) set_max() (processes.ProcessProgFeedback method) set_particle_check_state() (main.MainWindow method) set_progress (signals.ProcessThreadSignals attribute) set_progress() (main.MainWindow method) set_roi_plot_ticks() (controllers.SpectraController method) set_selected_step() (grouping.AHCA method) set_source_folder() (file_conversion.ConvertFileDialog method) set_source_format() (file_conversion.ConvertFileDialog method) set_start (signals.WorkerSignals attribute) (signals.WorkerSigPassType attribute) set_start() (processes.PassSigFeedback method) set_startpoint() (main.MainWindow method) set_status() (processes.ProcessProgFeedback method) set_timeout_text() (custom_dialogs.TimedMessageBox method) set_tmin (signals.WorkerSignals attribute) (signals.WorkerSigPassType attribute) set_tmin() (controllers.LifetimeController method) (processes.PassSigFeedback method) set_value() (processes.ProcessProgFeedback method) setChecked() (tree_model.DatasetTreeNode method) setData() (tree_model.DatasetTreeModel method) setDefaultButton() (custom_dialogs.TimedMessageBox method) SetMax (processes.ProcessProgressCmd attribute) (thread_commands.ProgressCmd attribute) SetStatus (processes.ProcessProgressCmd attribute) setText() (custom_dialogs.TimedMessageBox method) settings (change_point.ChangePointAnalysis attribute) Settings (class in settings_dialog) settings (main.MainWindow attribute) (tcspcfit.FittingDialog attribute) (tcspcfit.FluoFit attribute) settings_dialog module settings_dialog (main.MainWindow attribute) settings_dialog_file (in module settings_dialog) SettingsDialog (class in settings_dialog) setup() (smsh5.Histogram method) setup_logger() (in module my_logger) setup_next_step() (grouping.ClusteringStep method) setup_params() (tcspcfit.FluoFit method) setup_plot() (controllers.AntibunchingController method) (controllers.FilteringController method) (controllers.IntController method) (controllers.LifetimeController method) setup_widget() (controllers.AntibunchingController static method) (controllers.IntController static method) (controllers.LifetimeController static method) SetValue (processes.ProcessProgressCmd attribute) (thread_commands.ProgressCmd attribute) shift (in module simdata_new) (main.MainWindow attribute) (smsh5.Histogram attribute) (tcspcfit.FittingParameters attribute) (tcspcfit.FluoFit attribute) shiftmax (tcspcfit.FluoFit attribute)

shiftmin (tcspcfit.FluoFit attribute) should_trim_traces (quick_roi_dialog.QuickROIDialog attribute) show_exp_trace (controllers.IntController attribute) show_int_hist (controllers.IntController attribute) show_level_info (controllers.IntController attribute) show_residual_widget (signals.WorkerSignals attribute) show_residual_widget_lock (signals.WorkerSignals attribute) show_residuals_widget() (controllers.LifetimeController method) ShowMessage (thread_commands.StatusCmd attribute) sig_args (processes.ProcessSigPassTask attribute) sig_pass_type (processes.ProcessSigPassTask attribute) SIG_ROI_CHANGE_THRESHOLD (in module controllers) sigma (in module simdata_new) signals module signals (exporting.Exporter attribute) (exporting.ExportWorker attribute) (save_and_load.LoadAnalysisWorker attribute) (save_and_load.SaveAnalysisWorker attribute) (threads.WorkerBinAll attribute) (threads.WorkerFitLifetimes attribute) (threads.WorkerGrouping attribute) (threads.WorkerResolveLevels attribute) sim_irf() (tcspcfit.FluoFit static method) simdata_new module Single (processes.ProcessProgressCmd attribute) (thread_commands.ProgressCmd attribute) single() (processes.ProcessProgFeedback method) single_level (grouping.ClusteringStep attribute) SingleProcess (class in processes) size_type (dbg.MemSize attribute) size_type_2_str() (dbg.MemSize static method) slot_plot_spectra() (controllers.SpectraController method) SMS_VERSION (in module main) smsh5 module smsh5_file_reader module solution_clicked() (controllers.GroupingController method) Source (file_manager.Type attribute) Spectra (class in smsh5) spectra() (in module smsh5_file_reader) spectra_abstimes() (in module smsh5_file_reader) spectra_controller (main.MainWindow attribute) spectra_exposure_time() (in module smsh5_file_reader) spectra_image_view (controllers.SpectraController attribute) spectra_wavelengths() (in module smsh5_file_reader) SpectraController (class in controllers) start (main.MainWindow attribute) Start (processes.ProcessProgressCmd attribute) start (tcspcfit.FittingParameters attribute) start() (processes.ProcessProgFeedback method) start_at_value() (smsh5.Histogram static method) start_binall_thread() (controllers.IntController method) start_corr_thread() (controllers.AntibunchingController method) start_fitting_thread() (controllers.LifetimeController method) start_global_grouping_thread() (controllers.GroupingController method) start_grouping_thread() (controllers.GroupingController method) start_progress (signals.ProcessThreadSignals attribute) (signals.WorkerSignals attribute) (signals.WorkerSigPassType attribute) start_progress() (main.MainWindow method) (processes.ProcessProgress method) start_resolve_thread() (controllers.IntController method) start_time_offset_ns (grouping.GlobalLevel attribute) startpoint (controllers.LifetimeController attribute) (tcspcfit.FluoFit attribute) status_message (signals.WorkerSignals attribute) (signals.WorkerSigPassType attribute) (threads.ProcessThread property) status_message() (main.MainWindow method) status_update (signals.ProcessThreadSignals attribute) StatusCmd (class in thread_commands) stds (smsh5.Histogram attribute) (tcspcfit.FluoFit attribute) Step (processes.ProcessProgressCmd attribute) (thread_commands.ProgressCmd attribute) step() (processes.ProcessProgFeedback method) step_one_progress (signals.ProcessThreadSignals attribute) step_progress (signals.ProcessThreadSignals attribute) steps (grouping.AHCA attribute) steps_num_groups (grouping.AHCA property) str_2_size_type() (dbg.MemSize static method) strict_iterate() (processes.ProgressTracker method) sum (change_point.Err attribute) sums_file_check() (main.MainWindow method) SUMS_VERSION (in module generate_sums) switch_two_features() (controllers.FilteringController method) switching_frequency() (main.MainWindow method)

T

t (in module simdata_new), [1] (smsh5.Histogram property) (tcspcfit.FluoFit attribute) tab_change() (main.MainWindow method) task_buffer_size (threads.ProcessThread attribute) task_cmd (processes.ProcessProgressTask attribute) task_complete (processes.ProcessTaskResult attribute) task_queue (processes.SingleProcess attribute) (threads.ProcessThread attribute) task_return (processes.ProcessTaskResult attribute) task_uuid (processes.ProcessTaskResult attribute) tasks (threads.ProcessThread attribute) tau (in module simdata_new) (smsh5.Histogram attribute) (tcspcfit.FittingParameters attribute) (tcspcfit.FluoFit attribute) tau_edits (tcspcfit.FittingDialog attribute) tau_max_edits (tcspcfit.FittingDialog attribute) tau_min_edits (tcspcfit.FittingDialog attribute) TauData (class in change_point) taumax (tcspcfit.FluoFit attribute) taumin (tcspcfit.FluoFit attribute) tauparam (main.MainWindow attribute) tcspc_card() (in module smsh5_file_reader) tcspcfit module temp_ax (controllers.AntibunchingController attribute) (controllers.GroupingController attribute) (controllers.IntController attribute) (controllers.LifetimeController attribute) (controllers.RasterScanController attribute) (controllers.SpectraController attribute) temp_bins (controllers.IntController attribute) temp_dir (controllers.GroupingController attribute) temp_fig (controllers.AntibunchingController attribute) (controllers.GroupingController attribute) (controllers.IntController attribute) (controllers.LifetimeController attribute) (controllers.RasterScanController attribute) (controllers.SpectraController attribute)

test_need_roi_apply() (controllers.LifetimeController method) thread_commands module thread_tasks module threadpool (main.MainWindow attribute) threads module ThreeExp (class in tcspcfit) time_edits (tcspcfit.FittingDialog attribute) time_to_wait (custom_dialogs.TimedMessageBox attribute) TimedMessageBox (class in custom_dialogs) timer (custom_dialogs.TimedMessageBox attribute) times_ns (change_point.Level attribute) (grouping.GlobalLevel attribute) times_s (change_point.Level property) (grouping.GlobalLevel property) tmin (controllers.LifetimeController attribute) (thread_tasks.OpenFile property) Trace (class in smsh5) tree2dataset() (main.MainWindow method) tree2particle() (main.MainWindow method) tree_model module tree_view_clicked() (main.MainWindow method) tree_view_key_press() (main.MainWindow method) treemodel (main.MainWindow attribute) trim_trace() (smsh5.Particle method) two_feature_item (controllers.FilteringController attribute) two_features_changed() (controllers.FilteringController method) TwoExp (class in tcspcfit) Type (class in file_manager)

U

u() (in module dbg) UI (file_manager.Type attribute) unique_name (smsh5.Particle property) unload_file() (smsh5.H5dataset method) update_apply_roi_button_colors() (controllers.LifetimeController method) update_int_gui() (main.MainWindow method) update_level_info() (controllers.IntController method) update_plot_log() (controllers.LifetimeController method) update_progress() (main.MainWindow method) update_results() (controllers.LifetimeController method) update_roi() (smsh5.Histogram method) update_settings_from_dialog() (settings_dialog.SettingsDialog method) updateplot() (tcspcfit.FittingDialog method)

upper (change_point.Err attribute) use_parallel (smsh5.H5dataset attribute) use_roi (exporting.ExporterOptions property) use_roi_for_grouping (grouping.AHCA attribute) (smsh5.GlobalParticle attribute) (smsh5.Particle property) user() (in module smsh5_file_reader) user_text (custom_dialogs.TimedMessageBox attribute) uuid (antibunching.AntibunchingAnalysis attribute) (change_point.ChangePoints attribute) (grouping.AHCA attribute) (processes.ProcessTask attribute) (smsh5.GlobalParticle attribute) (smsh5.Particle attribute)

W

wavelengths (smsh5.Spectra property) worker_sig_pass() (in module signals) WorkerBinAll (class in threads) WorkerFitLifetimes (class in threads)

WorkerGrouping (class in threads) WorkerResolveLevels (class in threads) WorkerSignals (class in signals) WorkerSigPassType (class in signals) write_dataframe_to_file() (exporting.Exporter static method)

X

x_axis_pos (smsh5.RasterScan attribute)

x_start (smsh5.RasterScan attribute)

Y

y_axis_pos (smsh5.RasterScan attribute)

y_start (smsh5.RasterScan attribute)