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H
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I
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Symbols
{{ obj.name }}{% if obj.args %}({{ obj.args|join(',') }}){% endif %}() (class)
_
__docformat__ (in module antibunching)
(in module change_point)
(in module controllers)
(in module generate_sums)
(in module main)
(in module save_and_load)
(in module settings_dialog)
(in module smsh5)
(in module tcspcfit)
__eq__() (change_point.ParticleMicrotimesSubset method)
__get_rs_dataset() (in module smsh5_file_reader)
__getitem__() (change_point.ParticleMicrotimesSubset method)
__iter__() (change_point.ParticleMicrotimesSubset method)
__len__() (change_point.ParticleMicrotimesSubset method)
__repr__() (change_point.ParticleMicrotimesSubset method)
__str__() (dbg.MemSize method)
__weighted_likelihood_ratio() (change_point.ChangePointAnalysis method)
_abstimes (change_point.ChangePointAnalysis property)
_block_change() (controllers.FilteringController static method)
_calc_and_store() (generate_sums.CPSums method)
_calc_sums() (generate_sums.CPSums method)
_export_level_plot() (exporting.Exporter method)
_export_levels() (exporting.Exporter method)
_export_trace() (exporting.Exporter method)
_filter_numeric_data() (controllers.FilteringController static method)
_find_all_cpts() (change_point.ChangePointAnalysis method)
_get_ind() (change_point.ParticleMicrotimesSubset method)
_get_label() (controllers.FilteringController static method)
_has_spectra (smsh5.Spectra property)
_micro_dataset (change_point.ParticleMicrotimesSubset property)
_microtimes (change_point.ChangePointAnalysis property)
_new_set_text() (custom_dialogs.TimedMessageBox method)
_next_seg_ind() (change_point.ChangePointAnalysis method)
_open_file() (exporting.Exporter static method)
A
ab_analysis (smsh5.Particle property)
abs_times (change_point.Level property)
abstimes (smsh5.Particle property)
abstimes() (in module smsh5_file_reader)
abstimes2() (in module smsh5_file_reader)
accepted_callback() (quick_roi_dialog.QuickROIDialog method)
(settings_dialog.SettingsDialog method)
acf (in module simdata_new)
act_deselect_all() (main.MainWindow method)
act_detect_remove_bursts_all() (main.MainWindow method)
act_detect_remove_bursts_current() (main.MainWindow method)
act_detect_remove_bursts_selected() (main.MainWindow method)
act_filtering_and_normalization_dialog() (main.MainWindow method)
act_invert_selection() (main.MainWindow method)
act_open_h5() (main.MainWindow method)
act_open_settings_dialog() (main.MainWindow method)
act_remove_bursts_all() (main.MainWindow method)
act_remove_bursts_current() (main.MainWindow method)
act_remove_bursts_selected() (main.MainWindow method)
act_restore_bursts_all() (main.MainWindow method)
act_restore_bursts_current() (main.MainWindow method)
act_restore_bursts_selected() (main.MainWindow method)
act_save_analysis() (main.MainWindow method)
act_save_selected() (main.MainWindow method)
act_select_all() (main.MainWindow method)
act_set_startpoint() (main.MainWindow method)
act_switch_all() (main.MainWindow method)
act_switch_selected() (main.MainWindow method)
act_trim() (main.MainWindow method)
add_all_nodes() (main.MainWindow method)
add_all_particlenodes (signals.WorkerSignals attribute)
(signals.WorkerSigPassType attribute)
add_all_particlenodes() (processes.PassSigFeedback method)
add_dataset() (main.MainWindow method)
add_datasetindex (signals.WorkerSignals attribute)
(signals.WorkerSigPassType attribute)
add_datasetnode() (processes.PassSigFeedback method)
add_irf (signals.WorkerSignals attribute)
(signals.WorkerSigPassType attribute)
add_irf() (controllers.LifetimeController method)
(processes.PassSigFeedback method)
add_max() (processes.ProcessProgFeedback method)
add_node() (main.MainWindow method)
add_particle_to_h5() (convert_pt3.Pt3Reader method)
add_particlenode (signals.WorkerSignals attribute)
(signals.WorkerSigPassType attribute)
add_particlenode() (processes.PassSigFeedback method)
add_progress (signals.ProcessThreadSignals attribute)
add_tasks() (threads.ProcessThread method)
add_tasks_from_methods() (threads.ProcessThread method)
addChild() (tree_model.DatasetTreeModel method)
(tree_model.DatasetTreeNode method)
AddMax (processes.ProcessProgressCmd attribute)
(thread_commands.ProgressCmd attribute)
after_show() (main.MainWindow method)
ahc() (grouping.ClusteringStep method)
AHCA (class in grouping)
amp (in module simdata_new)
antibunching
module
AntibunchingAnalysis (class in antibunching)
AntibunchingController (class in controllers)
any_int_plot_double_click() (controllers.IntController method)
any_particle_text_plot (exporting.ExporterOptions property)
apply_autoproxy_fix() (in module processes)
apply_filters() (controllers.FilteringController method)
apply_groups() (controllers.GroupingController method)
apply_normalization() (controllers.FilteringController method)
apply_roi() (controllers.LifetimeController method)
auto_num_bins_changed() (controllers.FilteringController method)
auto_progress (signals.WorkerSignals attribute)
(signals.WorkerSigPassType attribute)
AutoProxy() (in module processes)
B
BACKGROUND_SECTION_LENGTH (in module tcspcfit)
best_grouping_ind (smsh5.GlobalParticle property)
(smsh5.Particle property)
best_step (grouping.AHCA property)
bg_est (in module simdata_new)
bin_all() (in module thread_tasks)
bin_all_ints() (smsh5.H5dataset method)
bin_size (signals.WorkerSignals attribute)
(signals.WorkerSigPassType attribute)
bin_size() (processes.PassSigFeedback method)
BinAll (class in thread_tasks)
binall_thread_complete() (controllers.IntController method)
binints() (smsh5.Particle method)
bit (dbg.MemSizeType attribute)
build_global() (controllers.GroupingController method)
burst_levels (smsh5.Particle property)
byte (dbg.MemSizeType attribute)
C
calc_and_store_sums() (in module generate_sums)
calc_bic() (grouping.ClusteringStep method)
calc_int_bounds() (grouping.ClusteringStep method)
calc_mean_std() (change_point.ChangePoints method)
calc_step_value() (processes.ProgressTracker method)
calc_store_sums() (main.MainWindow method)
calculate_bg() (tcspcfit.FluoFit method)
calculate_boundaries() (tcspcfit.FluoFit static method)
card_selected() (main.MainWindow method)
centre (in module simdata_new)
change_content() (custom_dialogs.TimedMessageBox method)
change_irf_start() (controllers.LifetimeController method)
change_plot_type() (controllers.FilteringController method)
change_point
module
change_spectra_edt() (convert_pt3.ConvertPt3Dialog method)
ChangePointAnalysis (class in change_point)
ChangePoints (class in change_point)
channelwidth (in module simdata_new)
check_burst() (change_point.ChangePoints method)
check_fbk_queue() (threads.ProcessThread method)
check_ready() (convert_pt3.ConvertPt3Dialog method)
check_rois_and_set_label() (controllers.GroupingController method)
checked() (tree_model.DatasetTreeNode method)
child() (tree_model.DatasetTreeNode method)
childCount() (tree_model.DatasetTreeNode method)
chisq (in module simdata_new)
ChiSquared (controllers.PlotFeature attribute)
clear_and_backup_results() (grouping.AHCA method)
clear_bic() (controllers.GroupingController method)
close_file() (main.MainWindow method)
closeEvent() (custom_dialogs.TimedMessageBox method)
ClusteringStep (class in grouping)
colorshift() (in module tcspcfit)
columnCount() (tree_model.DatasetTreeModel method)
(tree_model.DatasetTreeNode method)
Complete (processes.ProcessProgressCmd attribute)
(thread_commands.ProgressCmd attribute)
conf_regions (change_point.ChangePoints property)
confidence (change_point.ChangePoints property)
controllers
module
convd (in module simdata_new)
,
[1]
convdnoise (in module simdata_new)
convdsum (in module simdata_new)
convert() (convert_pt3.ConvertPt3Dialog method)
convert_pt3
module
convert_pt3_dialog() (main.MainWindow method)
convert_pt3_dialog_file (in module convert_pt3)
convert_ui
module
convert_ui() (in module convert_ui)
convert_v1_05_to_v1_06() (in module save_and_load)
ConvertPt3Dialog (class in convert_pt3)
corr_thread_complete() (controllers.AntibunchingController method)
correlate_particle() (antibunching.AntibunchingAnalysis method)
correlate_times() (antibunching.AntibunchingAnalysis static method)
cpa_has_run (change_point.ChangePoints property)
CPSums (class in generate_sums)
cpt_inds (change_point.ChangePoints property)
create_crosshair_item() (controllers.RasterScanController static method)
create_manager() (in module processes)
create_queue() (in module processes)
create_text_item() (controllers.RasterScanController static method)
current2data() (smsh5.Particle method)
current_group2data() (smsh5.Particle method)
custom_dialogs
module
D
Data (file_manager.Type attribute)
data (smsh5.Spectra property)
data() (tree_model.DatasetTreeModel method)
(tree_model.DatasetTreeNode method)
data_loaded (signals.WorkerSignals attribute)
(signals.WorkerSigPassType attribute)
data_loaded() (processes.PassSigFeedback method)
datadict (in module simdata_new)
DATAFRAME_FORMATS (in module exporting)
dataset (smsh5.RasterScan property)
DatasetTreeModel (class in tree_model)
DatasetTreeNode (class in tree_model)
date() (in module smsh5_file_reader)
dbg
module
define_levels() (change_point.ChangePointAnalysis method)
description() (in module smsh5_file_reader)
detect_remove_bursts() (main.MainWindow method)
df_len() (tcspcfit.FluoFit static method)
differences (in module simdata_new)
difftime (controllers.AntibunchingController property)
disable_amps() (tcspcfit.FittingDialog method)
display_data() (main.MainWindow method)
display_on() (in module main)
display_reset() (in module main)
Docs (file_manager.Type attribute)
durbinwatson() (tcspcfit.FluoFit method)
DW (controllers.PlotFeature attribute)
dwell_time_roi (smsh5.Particle property)
dwell_time_s (change_point.Level property)
(grouping.GlobalLevel property)
(grouping.Group property)
(smsh5.Particle property)
E
emc() (grouping.ClusteringStep method)
enable_sim_vals() (tcspcfit.FittingDialog method)
end() (processes.ProcessProgFeedback method)
end_progress (signals.ProcessThreadSignals attribute)
(signals.WorkerSignals attribute)
(signals.WorkerSigPassType attribute)
end_progress() (main.MainWindow method)
Err (class in change_point)
error (signals.ProcessThreadSignals attribute)
(signals.WorkerSignals attribute)
(signals.WorkerSigPassType attribute)
error() (controllers.AntibunchingController method)
(controllers.GroupingController method)
(controllers.IntController method)
(controllers.LifetimeController method)
error_handler() (main.MainWindow method)
estimate_bg() (tcspcfit.FluoFit static method)
ex_corr_hists (exporting.ExporterOptions property)
ex_df_format (exporting.ExporterOptions property)
ex_df_grouped_levels (exporting.ExporterOptions property)
ex_df_grouped_levels_lifetimes (exporting.ExporterOptions property)
ex_df_grouping_info (exporting.ExporterOptions property)
ex_df_levels (exporting.ExporterOptions property)
ex_df_levels_lifetimes (exporting.ExporterOptions property)
ex_global_grouped_levels (exporting.ExporterOptions property)
ex_grouped_levels (exporting.ExporterOptions property)
ex_grouping_info (exporting.ExporterOptions property)
ex_grouping_results (exporting.ExporterOptions property)
ex_hist (exporting.ExporterOptions property)
ex_levels (exporting.ExporterOptions property)
ex_lifetime (exporting.ExporterOptions property)
ex_plot_corr_hists (exporting.ExporterOptions property)
ex_plot_grouping_bics (exporting.ExporterOptions property)
ex_plot_intensities (exporting.ExporterOptions property)
ex_plot_intensities_only (exporting.ExporterOptions property)
ex_plot_intensities_with_levels (exporting.ExporterOptions property)
ex_plot_intensities_with_levels_and_groups (exporting.ExporterOptions property)
ex_plot_lifetimes (exporting.ExporterOptions property)
ex_plot_lifetimes_fit_and_residuals (exporting.ExporterOptions property)
ex_plot_lifetimes_hist_only (exporting.ExporterOptions property)
ex_plot_lifetimes_only_groups (exporting.ExporterOptions property)
ex_plot_lifetimes_with_fit (exporting.ExporterOptions property)
ex_plot_raster_scans (exporting.ExporterOptions property)
ex_plot_spectra (exporting.ExporterOptions property)
ex_raster_scan_2d (exporting.ExporterOptions property)
ex_spectra_2d (exporting.ExporterOptions property)
ex_traces (exporting.ExporterOptions property)
EXCLUSION_MODULES (in module dbg)
EXCLUSION_TYPES (in module dbg)
exec() (custom_dialogs.TimedMessageBox method)
exp_trace_chb_changed() (controllers.IntController method)
explore_sizes() (in module dbg)
export_corr() (exporting.Exporter method)
export_corr_hists() (exporting.Exporter method)
export_dataframes() (exporting.Exporter method)
export_grouping_info() (exporting.Exporter method)
export_grouping_results() (exporting.Exporter method)
export_hists() (exporting.Exporter method)
export_levels() (exporting.Exporter method)
export_levels_global_grouped_plot() (exporting.Exporter method)
export_levels_grouped_plot() (exporting.Exporter method)
export_lifetimes() (exporting.Exporter method)
EXPORT_MPL_DPI (in module controllers)
EXPORT_MPL_HEIGHT (in module controllers)
EXPORT_MPL_WIDTH (in module controllers)
export_plot_item() (in module controllers)
export_raster_scan_2d() (exporting.Exporter method)
export_spectra_2d() (exporting.Exporter method)
export_trace() (exporting.Exporter method)
EXPORT_WIDTH (in module controllers)
Exporter (class in exporting)
ExporterOptions (class in exporting)
exporting
module
ExportWorker (class in exporting)
F
FakeCpts (class in smsh5)
file (in module simdata_new)
(smsh5.H5dataset property)
(smsh5.Particle property)
file_group (smsh5.Particle property)
file_manager
module
file_path (thread_tasks.OpenFile property)
file_version() (in module smsh5_file_reader)
filter_option_changed() (controllers.FilteringController method)
filter_with_settings() (exporting.Exporter static method)
FilteringController (class in controllers)
finished (signals.ProcessThreadSignals attribute)
first_group_level_ind_in_roi (smsh5.Particle property)
first_level_ind_in_roi (smsh5.Particle property)
fit (in module simdata_new)
fit() (smsh5.Histogram method)
fit_intensity_lifetime() (controllers.FilteringController method)
fit_part_and_levels() (smsh5.ParticleAllHists method)
fitfunc() (in module simdata_new)
(tcspcfit.ThreeExp method)
fitfunc1() (in module simdata_new)
fitfunc_ls() (tcspcfit.OneExp method)
(tcspcfit.TwoExp method)
fitfunc_ml() (tcspcfit.OneExp method)
(tcspcfit.TwoExp method)
fitting_dialog_file (in module tcspcfit)
fitting_finished (signals.WorkerSignals attribute)
(signals.WorkerSigPassType attribute)
fitting_thread_complete() (controllers.LifetimeController method)
FittingDialog (class in tcspcfit)
FittingParameters (class in tcspcfit)
flags() (tree_model.DatasetTreeModel method)
FluoFit (class in tcspcfit)
folder_path() (in module file_manager)
fwhm (in module simdata_new)
G
gather_replace_results() (controllers.AntibunchingController method)
(controllers.GroupingController method)
(controllers.IntController method)
(controllers.LifetimeController method)
gauss (in module simdata_new)
,
[1]
generate_sums
module
get() (settings_dialog.Settings method)
get_all_dict() (settings_dialog.Settings method)
get_all_feature_data() (controllers.FilteringController method)
get_all_filter() (controllers.FilteringController method)
get_all_levels_with_lifetime() (controllers.FilteringController method)
get_all_raster_scans() (smsh5.H5dataset method)
get_bin() (controllers.IntController method)
get_checked() (main.MainWindow method)
get_checked_nums() (main.MainWindow method)
get_checked_particles() (main.MainWindow method)
get_data() (controllers.FilteringController method)
get_default_settings() (settings_dialog.Settings method)
get_dict() (controllers.PlotFeature class method)
get_empty_queue_exception() (in module processes)
get_feature_data() (controllers.FilteringController method)
get_filter_settings() (controllers.FilteringController method)
get_from_gui() (tcspcfit.FittingParameters method)
get_gui_confidence() (controllers.IntController method)
get_list() (controllers.PlotFeature class method)
get_max_num_processes() (in module processes)
get_mode() (selection.RangeSelectionDialog method)
get_particle() (tree_model.DatasetTreeModel method)
get_path_type_str() (in module file_manager)
get_selection() (selection.RangeSelectionDialog method)
get_set() (generate_sums.CPSums method)
get_sig_e() (generate_sums.CPSums method)
get_size() (in module dbg)
get_tau_a() (change_point.TauData method)
get_tau_b() (change_point.TauData method)
get_two_features() (controllers.FilteringController method)
get_u_k() (generate_sums.CPSums method)
get_u_k_n() (generate_sums.CPSums method)
get_v2_k() (generate_sums.CPSums method)
get_v2_k_n() (generate_sums.CPSums method)
getfromdialog() (tcspcfit.FittingParameters method)
getparams() (tcspcfit.FittingDialog method)
gigabit (dbg.MemSizeType attribute)
gigabyte (dbg.MemSizeType attribute)
global_gather_replace_results() (controllers.GroupingController method)
global_group_levels (smsh5.Particle property)
global_grouping_thread_complete() (controllers.GroupingController method)
global_levels (smsh5.GlobalParticle property)
global_particle (smsh5.Particle property)
GlobalLevel (class in grouping)
GlobalParticle (class in smsh5)
Group (class in grouping)
group_2_levels() (grouping.ClusteringStep method)
group_ints (grouping.ClusteringStep property)
group_level_dwelltimes (grouping.ClusteringStep property)
group_level_ints (grouping.ClusteringStep property)
group_levels (smsh5.Particle property)
group_levels_roi (smsh5.Particle property)
group_microtimes (grouping.Group property)
group_num_levels (grouping.ClusteringStep property)
group_times_ns (grouping.Group property)
group_total_dwelltime (grouping.ClusteringStep property)
grouped_with_roi (smsh5.Particle property)
grouping
module
grouping_bics (smsh5.GlobalParticle property)
(smsh5.Particle property)
grouping_finished (signals.WorkerSignals attribute)
(signals.WorkerSigPassType attribute)
grouping_num_groups (smsh5.GlobalParticle property)
(smsh5.Particle property)
grouping_selected_ind (smsh5.GlobalParticle property)
(smsh5.Particle property)
grouping_thread_complete() (controllers.GroupingController method)
GroupingController (class in controllers)
groups (smsh5.GlobalParticle property)
(smsh5.Particle property)
groups_bounds (smsh5.GlobalParticle property)
(smsh5.Particle property)
groups_ints (smsh5.GlobalParticle property)
(smsh5.Particle property)
groups_to_df() (exporting.Exporter static method)
gui_apply_bin() (controllers.IntController method)
gui_apply_bin_all() (controllers.IntController method)
gui_apply_groups_all() (controllers.GroupingController method)
gui_apply_groups_current() (controllers.GroupingController method)
gui_apply_groups_selected() (controllers.GroupingController method)
gui_apply_roi_all() (controllers.LifetimeController method)
gui_apply_roi_current() (controllers.LifetimeController method)
gui_apply_roi_selected() (controllers.LifetimeController method)
gui_chb_show_global_groups() (controllers.IntController method)
gui_chb_show_groups() (controllers.IntController method)
gui_correlate_all() (controllers.AntibunchingController method)
gui_correlate_current() (controllers.AntibunchingController method)
gui_correlate_selected() (controllers.AntibunchingController method)
gui_curr_chb() (controllers.AntibunchingController method)
gui_export() (main.MainWindow method)
gui_export_all() (main.MainWindow method)
gui_export_current() (main.MainWindow method)
gui_export_selected() (main.MainWindow method)
gui_fit_all() (controllers.LifetimeController method)
gui_fit_current() (controllers.LifetimeController method)
gui_fit_levels() (controllers.LifetimeController method)
gui_fit_param() (controllers.LifetimeController method)
gui_fit_selected() (controllers.LifetimeController method)
gui_group_all() (controllers.GroupingController method)
gui_group_current() (controllers.GroupingController method)
gui_group_global() (controllers.GroupingController method)
gui_group_selected() (controllers.GroupingController method)
gui_group_use_roi() (main.MainWindow method)
gui_jump_to_groups() (controllers.LifetimeController method)
gui_load_irf() (controllers.LifetimeController method)
gui_next_lev() (controllers.LifetimeController method)
gui_plot_intensity_clicked() (main.MainWindow method)
gui_plot_lifetime_clicked() (main.MainWindow method)
gui_prev_lev() (controllers.LifetimeController method)
gui_quick_roi() (controllers.IntController method)
gui_reset_roi_all() (quick_roi_dialog.QuickROIDialog method)
gui_reset_roi_current() (quick_roi_dialog.QuickROIDialog method)
gui_reset_roi_selected() (quick_roi_dialog.QuickROIDialog method)
gui_resolve() (controllers.IntController method)
gui_resolve_all() (controllers.IntController method)
gui_resolve_selected() (controllers.IntController method)
gui_rot_roi() (controllers.SpectraController method)
gui_select_groups_changed() (main.MainWindow method)
gui_show_hide_residuals() (controllers.LifetimeController method)
gui_sub_bkg() (controllers.SpectraController method)
gui_use_roi_changed() (controllers.LifetimeController method)
gui_whole_trace() (controllers.LifetimeController method)
H
H5dataset (class in smsh5)
halfmaxind (in module simdata_new)
has_asizeof (in module dbg)
has_burst (smsh5.Particle property)
has_corr (smsh5.Particle property)
has_global_grouping (smsh5.Particle property)
has_groups (smsh5.GlobalParticle property)
(smsh5.Particle property)
has_intensity() (in module smsh5_file_reader)
has_levels (change_point.ChangePoints property)
(smsh5.GlobalParticle property)
(smsh5.Particle property)
has_power_measurement() (in module smsh5_file_reader)
has_raster_scan() (in module smsh5_file_reader)
has_spectra (smsh5.Particle property)
has_spectra() (in module smsh5_file_reader)
hide_show_chb() (controllers.IntController method)
hist_chb_changed() (controllers.IntController method)
Histogram (class in smsh5)
histogram (smsh5.Particle property)
I
Icons (file_manager.Type attribute)
icons_rc
module
in_mb() (dbg.MemSize method)
index() (tree_model.DatasetTreeModel method)
int_p_s (grouping.Group property)
int_trace() (in module smsh5_file_reader)
IntController (class in controllers)
Intensity (controllers.PlotFeature attribute)
irf (in module simdata_new)
(thread_tasks.OpenFile property)
IRFShift (controllers.PlotFeature attribute)
iterate() (processes.ProcessProgress method)
(processes.ProgressTracker method)
K
kilobit (dbg.MemSizeType attribute)
kilobyte (dbg.MemSizeType attribute)
L
last_group_level_ind_in_roi (smsh5.Particle property)
last_level_ind_in_roi (smsh5.Particle property)
Level (class in change_point)
level_dwelltimes (change_point.ChangePointAnalysis property)
(change_point.ChangePoints property)
(smsh5.Particle property)
level_dwelltimes_roi (smsh5.Particle property)
level_info_chb_changed() (controllers.IntController method)
level_ints (change_point.ChangePointAnalysis property)
(change_point.ChangePoints property)
(smsh5.Particle property)
level_ints_roi (smsh5.Particle property)
level_particle_dataset_inds (smsh5.GlobalParticle property)
level_resolved (signals.WorkerSignals attribute)
(signals.WorkerSigPassType attribute)
levelhist() (smsh5.Histogram method)
levels (change_point.ChangePoints property)
(smsh5.Particle property)
levels2data() (smsh5.Particle method)
levels_roi (smsh5.Particle property)
levels_roi_force (smsh5.Particle property)
levels_to_df() (exporting.Exporter method)
Lifetime (controllers.PlotFeature attribute)
LifetimeController (class in controllers)
lifetimes2data() (smsh5.Particle method)
load_analysis() (in module save_and_load)
load_data() (thread_tasks.OpenFile method)
load_file() (smsh5.H5dataset method)
load_settings() (change_point.ChangePointAnalysis method)
(settings_dialog.SettingsDialog method)
(tcspcfit.FittingDialog method)
(tcspcfit.FluoFit method)
load_settings_from_file() (settings_dialog.Settings method)
LoadAnalysisWorker (class in save_and_load)
locate_uuid() (in module processes)
logger (in module antibunching)
(in module change_point)
(in module controllers)
(in module convert_pt3)
(in module exporting)
(in module file_manager)
(in module generate_sums)
(in module grouping)
(in module main)
(in module processes)
(in module settings_dialog)
(in module signals)
(in module smsh5)
(in module tcspcfit)
(in module thread_tasks)
(in module threads)
(in module tree_model)
M
main
module
main() (in module change_point)
(in module generate_sums)
(in module main)
main_window (exporting.Exporter property)
main_window_file (in module main)
MainWindow (class in main)
make_model() (tcspcfit.FittingDialog method)
makeconvd() (tcspcfit.FluoFit method)
makegrouphists() (smsh5.Particle method)
makegrouplevelhists() (smsh5.Particle method)
makehistogram() (smsh5.Particle method)
makehistograms() (smsh5.H5dataset method)
(smsh5.Particle method)
makelevelhists() (smsh5.Particle method)
makerow() (in module tcspcfit)
max_continuous_zeros() (in module tcspcfit)
max_jm() (in module grouping)
megabit (dbg.MemSizeType attribute)
megabyte (dbg.MemSizeType attribute)
MemSize (class in dbg)
MemSizeType (class in dbg)
microtimes (in module simdata_new)
,
[1]
(smsh5.Particle property)
microtimes() (in module smsh5_file_reader)
microtimes2() (in module smsh5_file_reader)
microtimes_roi (smsh5.Particle property)
minfunc() (in module tcspcfit)
ml_curve_fit() (in module tcspcfit)
mode_changed() (quick_roi_dialog.QuickROIDialog method)
module
antibunching
change_point
controllers
convert_pt3
convert_ui
custom_dialogs
dbg
exporting
file_manager
generate_sums
grouping
icons_rc
main
my_logger
processes
quick_roi_dialog
save_and_load
selection
settings_dialog
signals
simdata_new
smsh5
smsh5_file_reader
tcspcfit
thread_commands
thread_tasks
threads
tree_model
moving_avg() (in module tcspcfit)
mw (exporting.Exporter property)
my_logger
module
MyCrosshairOverlay (class in controllers)
myPlotROI (class in controllers)
N
num_cpts (change_point.ChangePoints property)
num_groups (smsh5.GlobalParticle property)
(smsh5.Particle property)
num_iterations (processes.ProgressTracker property)
num_levels (change_point.ChangePoints property)
(smsh5.Particle property)
num_levels_roi (smsh5.Particle property)
num_parts() (in module smsh5_file_reader)
num_photons (grouping.Group property)
num_photons_roi (smsh5.Particle property)
num_trackers (processes.ProgressTracker property)
numexp (smsh5.Particle property)
O
OneExp (class in tcspcfit)
open_file_error() (main.MainWindow method)
open_file_thread_complete() (main.MainWindow method)
open_h5() (thread_tasks.OpenFile method)
open_irf() (thread_tasks.OpenFile method)
open_save_file_version_outdated() (main.MainWindow method)
OpenFile (class in thread_tasks)
openfile_finished (signals.WorkerSignals attribute)
(signals.WorkerSigPassType attribute)
orig_AutoProxy (in module processes)
P
p() (in module dbg)
parent() (tree_model.DatasetTreeModel method)
(tree_model.DatasetTreeNode method)
Particle (class in smsh5)
particle() (in module smsh5_file_reader)
ParticleAllHists (class in smsh5)
ParticleMicrotimesSubset (class in change_point)
PassSigFeedback (class in processes)
passthrough (signals.ProcessThreadSignals attribute)
path() (in module file_manager)
pb_use_changed() (settings_dialog.SettingsDialog method)
PhotonNumber (controllers.PlotFeature attribute)
plot_all() (controllers.IntController method)
(controllers.LifetimeController method)
plot_convd (signals.WorkerSignals attribute)
plot_convd() (controllers.LifetimeController method)
plot_convd_export_lock (signals.WorkerSignals attribute)
plot_convd_lock (signals.WorkerSignals attribute)
plot_corr (signals.WorkerSignals attribute)
plot_corr() (controllers.AntibunchingController method)
plot_corr_export (signals.WorkerSignals attribute)
plot_corr_export_lock (signals.WorkerSignals attribute)
plot_corr_hists() (exporting.Exporter method)
plot_corr_lock (signals.WorkerSignals attribute)
plot_corr_sum() (controllers.AntibunchingController method)
plot_decay (signals.WorkerSignals attribute)
plot_decay() (controllers.LifetimeController method)
plot_decay_and_convd() (controllers.LifetimeController method)
plot_decay_convd_and_hist() (controllers.LifetimeController method)
plot_decay_convd_export (signals.WorkerSignals attribute)
plot_decay_convd_export_lock (signals.WorkerSignals attribute)
plot_decay_convd_residuals_export (signals.WorkerSignals attribute)
plot_decay_convd_residuals_export_lock (signals.WorkerSignals attribute)
plot_decay_export (signals.WorkerSignals attribute)
plot_decay_export_lock (signals.WorkerSignals attribute)
plot_decay_lock (signals.WorkerSignals attribute)
plot_distribution() (controllers.FilteringController method)
plot_features() (controllers.FilteringController method)
plot_fit_result() (controllers.FilteringController method)
plot_group_bic() (controllers.GroupingController method)
plot_group_bounds() (controllers.IntController method)
plot_group_bounds_export (signals.WorkerSignals attribute)
plot_group_bounds_export_lock (signals.WorkerSignals attribute)
plot_grouping_bic() (exporting.Exporter method)
plot_grouping_bic_export (signals.WorkerSignals attribute)
plot_grouping_bic_export_lock (signals.WorkerSignals attribute)
plot_hist() (controllers.IntController method)
plot_intensities() (exporting.Exporter method)
plot_levels (signals.WorkerSignals attribute)
plot_levels() (controllers.IntController method)
(exporting.Exporter method)
plot_levels_export (signals.WorkerSignals attribute)
plot_levels_export_lock (signals.WorkerSignals attribute)
plot_levels_lock (signals.WorkerSignals attribute)
plot_lifetime_fit_residuals() (exporting.Exporter method)
plot_lifetimes() (exporting.Exporter method)
plot_raster_scan() (controllers.RasterScanController method)
(exporting.Exporter method)
plot_raster_scan_export (signals.WorkerSignals attribute)
plot_raster_scan_export_lock (signals.WorkerSignals attribute)
plot_residuals() (controllers.LifetimeController method)
plot_residuals_export (signals.WorkerSignals attribute)
plot_residuals_export_lock (signals.WorkerSignals attribute)
plot_spectra() (controllers.SpectraController method)
(exporting.Exporter method)
plot_spectra_export (signals.WorkerSignals attribute)
plot_spectra_export_lock (signals.WorkerSignals attribute)
plot_trace (signals.WorkerSignals attribute)
plot_trace() (controllers.IntController method)
plot_trace_export (signals.WorkerSignals attribute)
plot_trace_export_lock (signals.WorkerSignals attribute)
plot_trace_lock (signals.WorkerSignals attribute)
plot_two_features() (controllers.FilteringController method)
PlotFeature (class in controllers)
power_measurement() (in module smsh5_file_reader)
prepare_plot_for_int_lifetime_fit() (controllers.FilteringController method)
prepare_text() (in module dbg)
print_size() (in module dbg)
processes
module
ProcessProgFeedback (class in processes)
ProcessProgress (class in processes)
ProcessProgressCmd (class in processes)
ProcessProgressTask (class in processes)
ProcessSigPassTask (class in processes)
ProcessTask (class in processes)
ProcessTaskResult (class in processes)
ProcessThread (class in threads)
ProcessThreadSignals (class in signals)
profile() (in module dbg)
prog_sig_pass() (in module processes)
progress (signals.WorkerSignals attribute)
(signals.WorkerSigPassType attribute)
progress_decrement (signals.WorkerSigPassType attribute)
ProgressCmd (class in thread_commands)
ProgressTracker (class in processes)
ProjectRoot (file_manager.Type attribute)
pt3_file (in module convert_pt3)
Pt3Reader (class in convert_pt3)
Q
qCleanupResources() (in module icons_rc)
qInitResources() (in module icons_rc)
qt_resource_data (in module icons_rc)
qt_resource_name (in module icons_rc)
qt_resource_struct_v1 (in module icons_rc)
qt_resource_struct_v2 (in module icons_rc)
qt_version (in module icons_rc)
quick_roi_dialog
module
quick_roi_dialog_file (in module quick_roi_dialog)
QuickROIDialog (class in quick_roi_dialog)
R
range_selection() (main.MainWindow method)
RangeSelectionDialog (class in selection)
raster_scan() (in module smsh5_file_reader)
raster_scan_coord() (in module smsh5_file_reader)
raster_scan_coordinates (smsh5.Particle property)
RasterScan (class in smsh5)
RasterScanController (class in controllers)
rcc_version (in module icons_rc)
rebin_corr() (antibunching.AntibunchingAnalysis method)
rebin_corrs() (controllers.AntibunchingController method)
rejected_callback() (quick_roi_dialog.QuickROIDialog method)
(settings_dialog.SettingsDialog method)
remove_and_reset_grouping() (smsh5.Particle method)
remove_bursts() (change_point.ChangePoints method)
(main.MainWindow method)
Reset (thread_commands.StatusCmd attribute)
reset() (change_point.ChangePointAnalysis method)
(processes.ProgressTracker method)
reset_dataset_filter() (controllers.FilteringController method)
reset_filters() (controllers.FilteringController method)
reset_grouping_ind() (smsh5.Particle method)
reset_gui (signals.WorkerSignals attribute)
(signals.WorkerSigPassType attribute)
reset_gui() (main.MainWindow method)
reset_normalization() (controllers.FilteringController method)
reset_roi() (quick_roi_dialog.QuickROIDialog method)
reset_selected_step() (grouping.AHCA method)
reset_to_default() (settings_dialog.SettingsDialog method)
reset_tree (signals.WorkerSignals attribute)
(signals.WorkerSigPassType attribute)
reset_tree() (processes.PassSigFeedback method)
resid (in module simdata_new)
resolve_finished (signals.WorkerSignals attribute)
(signals.WorkerSigPassType attribute)
resolve_thread_complete() (controllers.IntController method)
ResourcesRoot (file_manager.Type attribute)
restore_and_delete_backup() (grouping.AHCA method)
restore_bursts() (change_point.ChangePoints method)
(main.MainWindow method)
result (signals.WorkerSignals attribute)
(signals.WorkerSigPassType attribute)
results (signals.ProcessThreadSignals attribute)
results() (tcspcfit.FluoFit method)
roi_chb_changed() (controllers.IntController method)
roi_region_changed() (controllers.IntController method)
roi_region_photon_inds (smsh5.Particle property)
row() (tree_model.DatasetTreeNode method)
rowCount() (tree_model.DatasetTreeModel method)
rs_integration_time() (in module smsh5_file_reader)
rs_pixels_per_line() (in module smsh5_file_reader)
rs_range() (in module smsh5_file_reader)
rs_x_start() (in module smsh5_file_reader)
rs_y_start() (in module smsh5_file_reader)
run() (exporting.ExportWorker method)
(processes.SingleProcess method)
(save_and_load.LoadAnalysisWorker method)
(save_and_load.SaveAnalysisWorker method)
(threads.ProcessThread method)
(threads.WorkerBinAll method)
(threads.WorkerFitLifetimes method)
(threads.WorkerGrouping method)
(threads.WorkerResolveLevels method)
run_bin_all() (thread_tasks.BinAll method)
run_cpa() (change_point.ChangePointAnalysis method)
(change_point.ChangePoints method)
run_export() (exporting.Exporter method)
run_grouping() (grouping.AHCA method)
(smsh5.GlobalParticle method)
run_parallel_cpa() (main.MainWindow method)
RUNTIME_CONSOLE (in module dbg)
S
save_analysis() (in module save_and_load)
save_and_load
module
save_file_version_outdated (signals.WorkerSignals attribute)
SAVE_FORMAT (in module save_and_load)
save_particles() (smsh5.H5dataset method)
save_settings_to_file() (settings_dialog.Settings method)
(settings_dialog.SettingsDialog method)
SaveAnalysisWorker (class in save_and_load)
SAVING_VERSION (in module save_and_load)
select_all_dataframes_export_options() (main.MainWindow method)
select_all_export_options() (main.MainWindow method)
select_all_plots_export_options() (main.MainWindow method)
selected_step (grouping.AHCA property)
selection
module
selection_changed() (main.MainWindow method)
selection_dialog_path (in module selection)
series_times (smsh5.Spectra property)
set_all_dict() (settings_dialog.Settings method)
set_bin() (controllers.IntController method)
set_bin_size() (main.MainWindow method)
set_data_loaded() (main.MainWindow method)
set_dialog_settings() (settings_dialog.SettingsDialog method)
set_export_file() (convert_pt3.ConvertPt3Dialog method)
set_export_options() (main.MainWindow method)
set_filter_settings() (controllers.FilteringController method)
set_histgram() (smsh5.Particle method)
set_histgram_roi() (smsh5.Particle method)
set_level_resolved() (main.MainWindow method)
set_levels_to_use() (controllers.FilteringController method)
set_limits() (controllers.FilteringController method)
set_max() (processes.ProcessProgFeedback method)
set_particle_check_state() (main.MainWindow method)
set_progress (signals.ProcessThreadSignals attribute)
set_progress() (main.MainWindow method)
set_roi_plot_ticks() (controllers.SpectraController method)
set_selected_step() (grouping.AHCA method)
set_source_folder() (convert_pt3.ConvertPt3Dialog method)
set_start (signals.WorkerSignals attribute)
(signals.WorkerSigPassType attribute)
set_start() (processes.PassSigFeedback method)
set_startpoint() (main.MainWindow method)
set_status() (processes.ProcessProgFeedback method)
set_timeout_text() (custom_dialogs.TimedMessageBox method)
set_tmin (signals.WorkerSignals attribute)
(signals.WorkerSigPassType attribute)
set_tmin() (controllers.LifetimeController method)
(processes.PassSigFeedback method)
set_value() (processes.ProcessProgFeedback method)
setChecked() (tree_model.DatasetTreeNode method)
setData() (tree_model.DatasetTreeModel method)
setDefaultButton() (custom_dialogs.TimedMessageBox method)
SetMax (processes.ProcessProgressCmd attribute)
(thread_commands.ProgressCmd attribute)
SetStatus (processes.ProcessProgressCmd attribute)
setText() (custom_dialogs.TimedMessageBox method)
Settings (class in settings_dialog)
settings_dialog
module
settings_dialog_file (in module settings_dialog)
SettingsDialog (class in settings_dialog)
setup() (smsh5.Histogram method)
setup_logger() (in module my_logger)
setup_next_step() (grouping.ClusteringStep method)
setup_params() (tcspcfit.FluoFit method)
setup_plot() (controllers.AntibunchingController method)
(controllers.FilteringController method)
(controllers.IntController method)
(controllers.LifetimeController method)
setup_widget() (controllers.AntibunchingController static method)
(controllers.IntController static method)
(controllers.LifetimeController static method)
SetValue (processes.ProcessProgressCmd attribute)
(thread_commands.ProgressCmd attribute)
shift (in module simdata_new)
show_residual_widget (signals.WorkerSignals attribute)
show_residual_widget_lock (signals.WorkerSignals attribute)
show_residuals_widget() (controllers.LifetimeController method)
ShowMessage (thread_commands.StatusCmd attribute)
SIG_ROI_CHANGE_THRESHOLD (in module controllers)
sigma (in module simdata_new)
signals
module
sim_irf() (tcspcfit.FluoFit static method)
simdata_new
module
Single (processes.ProcessProgressCmd attribute)
(thread_commands.ProgressCmd attribute)
single() (processes.ProcessProgFeedback method)
SingleProcess (class in processes)
size_type_2_str() (dbg.MemSize static method)
slot_plot_spectra() (controllers.SpectraController method)
SMS_VERSION (in module main)
smsh5
module
smsh5_file_reader
module
solution_clicked() (controllers.GroupingController method)
Source (file_manager.Type attribute)
Spectra (class in smsh5)
spectra() (in module smsh5_file_reader)
spectra_abstimes() (in module smsh5_file_reader)
spectra_exposure_time() (in module smsh5_file_reader)
spectra_wavelengths() (in module smsh5_file_reader)
SpectraController (class in controllers)
Start (processes.ProcessProgressCmd attribute)
start() (processes.ProcessProgFeedback method)
start_at_value() (smsh5.Histogram static method)
start_binall_thread() (controllers.IntController method)
start_corr_thread() (controllers.AntibunchingController method)
start_fitting_thread() (controllers.LifetimeController method)
start_global_grouping_thread() (controllers.GroupingController method)
start_grouping_thread() (controllers.GroupingController method)
start_progress (signals.ProcessThreadSignals attribute)
(signals.WorkerSignals attribute)
(signals.WorkerSigPassType attribute)
start_progress() (main.MainWindow method)
(processes.ProcessProgress method)
start_resolve_thread() (controllers.IntController method)
status_message (signals.WorkerSignals attribute)
(signals.WorkerSigPassType attribute)
(threads.ProcessThread property)
status_message() (main.MainWindow method)
status_update (signals.ProcessThreadSignals attribute)
StatusCmd (class in thread_commands)
Step (processes.ProcessProgressCmd attribute)
(thread_commands.ProgressCmd attribute)
step() (processes.ProcessProgFeedback method)
step_one_progress (signals.ProcessThreadSignals attribute)
step_progress (signals.ProcessThreadSignals attribute)
steps_num_groups (grouping.AHCA property)
str_2_size_type() (dbg.MemSize static method)
strict_iterate() (processes.ProgressTracker method)
sums_file_check() (main.MainWindow method)
SUMS_VERSION (in module generate_sums)
switch_two_features() (controllers.FilteringController method)
switching_frequency() (main.MainWindow method)
T
t (in module simdata_new)
,
[1]
(smsh5.Histogram property)
tab_change() (main.MainWindow method)
tau (in module simdata_new)
TauData (class in change_point)
tcspc_card() (in module smsh5_file_reader)
tcspcfit
module
test_need_roi_apply() (controllers.LifetimeController method)
thread_commands
module
thread_tasks
module
threads
module
ThreeExp (class in tcspcfit)
TimedMessageBox (class in custom_dialogs)
times_s (change_point.Level property)
(grouping.GlobalLevel property)
tmin (thread_tasks.OpenFile property)
Trace (class in smsh5)
tree2dataset() (main.MainWindow method)
tree2particle() (main.MainWindow method)
tree_model
module
tree_view_clicked() (main.MainWindow method)
tree_view_key_press() (main.MainWindow method)
trim_trace() (smsh5.Particle method)
two_features_changed() (controllers.FilteringController method)
TwoExp (class in tcspcfit)
Type (class in file_manager)
U
u() (in module dbg)
UI (file_manager.Type attribute)
unique_name (smsh5.Particle property)
unload_file() (smsh5.H5dataset method)
update_apply_roi_button_colors() (controllers.LifetimeController method)
update_int_gui() (main.MainWindow method)
update_level_info() (controllers.IntController method)
update_plot_log() (controllers.LifetimeController method)
update_progress() (main.MainWindow method)
update_results() (controllers.LifetimeController method)
update_roi() (smsh5.Histogram method)
update_settings_from_dialog() (settings_dialog.SettingsDialog method)
updateplot() (tcspcfit.FittingDialog method)
use_roi (exporting.ExporterOptions property)
use_roi_for_grouping (smsh5.Particle property)
user() (in module smsh5_file_reader)
W
wavelengths (smsh5.Spectra property)
worker_sig_pass() (in module signals)
WorkerBinAll (class in threads)
WorkerFitLifetimes (class in threads)
WorkerGrouping (class in threads)
WorkerResolveLevels (class in threads)
WorkerSignals (class in signals)
WorkerSigPassType (class in signals)
write_dataframe_to_file() (exporting.Exporter static method)
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